human WGS fastq to gvcf variant calling with GATK4 CWL (with report)

Update run-tests.sh to use python 3

Option to store token in session storage & idle timeout

arvados-login-sync initializes user accounts with tokens

[doc] document deletion lifecycle of collections, and steps to undelete collections

add webshell to arvbox

Cannot set up federated user with a VM with LoginCluster

script to push arvados tokens to shell node accounts

[arvados-login-sync] user groups are not being updated

other cluster's special users (root and anonymous) can appear in user list

[a-d-c] flaky test

Ensure expired tokens are handle properly

API ensures configured Users.AnonymousUserToken is valid

webshell sends token too early

[keep-web] S3 ListObjects response should not have empty NextMarker field

webshell PAM should send "password:" or "token:" prompt

arvados-login-sync incorrectly skips users without an ssh key

[a-d-c] throttle option for concurrent VM create requests

missing can_read link from anonymous_user to anonymous_group

a-c-r depends on nodejs, should be documented and/or a package dependency

Workbench 2 uses correct version of arvados/jobs when submitting a workflow, not "latest"

[a-d-c] flaky test "Error: container completed twice"

Load demo data from openslide

conveniently edit login/pass user list in arvbox to avoid hardcoded logins

Some links do not work for wb2 v2.0.4

Support literal user/pass pairs in config file + make arvbox use it instead of SSO

arv-mount exception handler bug

[keep-web] Minimal implementation of S3 API

System Root Token cannot create tokens - null value in column "api_client_id"