Arvados

Story

New

Resolved

Sprint Impediments

18645

Design for search in dialogue window to select Project

Peter Amstutz

impediments

-c-a

19888 19888 Tests 59 Tests jenkins 2.5-run-tests doesn't work Resolved Resolved 3 19888 36 374 1
19647 19647 Peter Amstutz Peter Amstutz 47 Release Arvados 2.5.0 Resolved Resolved 3 5.0 5.0 5.0 19647 36 47 374 6 5.0		19648 19648 1. Prepare X.Y-staging branch 0 19647 3 36 -c-a 5 19649 19649 2. Update the "Upgrading Arvados and Release notes" doc page (main and release branch), update provision.sh, formula and arvbox to point to release 0 19647 3 36 -c-a 5 19650 19650 3. Ensure that the entire automated testing pipeline is passing on Jenkins 0 19647 3 36 -c-a 5 19651 19651 4. Review release branch 0 19647 3 36 -c-a 5 19652 19652 5. Draft release notes and publish them to www-dev 0 19647 3 36 -c-a 5 19653 19653 6. Review release notes 0 19647 3 36 -c-a 5 19654 19654 7. Create next redmine release 0 19647 3 36 -c-a 5 19655 19655 8. Build RC packages 0 19647 3 36 -c-a 5 19656 19656 9. Build RC arvados/jobs image 0 19647 3 36 -c-a 5 19657 19657 10. Ensure installer tests are passing 0 19647 3 36 -c-a 5 19658 19658 11. Build compute image & deploy RC packages to playground 0 19647 3 36 -c-a 5 19659 19659 12. Run bam-to-vcf demo pipeline 0 19647 3 36 -c-a 5 19660 19660 13. Manual testing 0 19647 3 36 -c-a 5 19661 19661 14. Approve RC for release 0 19647 3 36 -c-a 5 19662 19662 15. Build final release packages 0 19647 3 36 -c-a 5 19663 19663 16. Publish stable arvados/jobs Docker image 0 19647 3 36 -c-a 5 19664 19664 17. Push packages to stable 0 19647 3 36 -c-a 5 19665 19665 18. Publish Python and Ruby packages 0 19647 3 36 -c-a 5 19666 19666 19. Publish Java package 0 19647 3 36 -c-a 5 19667 19667 20. Publish R package 0 19647 3 36 -c-a 5 19668 19668 21. Publish arvados/arvbox-demo image 0 19647 3 36 -c-a 5 19669 19669 22. Tag commits, fast-forward X.Y-release branch to match X.Y-staging 0 19647 3 36 -c-a 5 19670 19670 23. Ensure doc.arvados.org is up to date 0 19647 3 36 -c-a 5 19671 19671 24. Merge release notes (step 6) from "develop" to "main" on arvados.org 0 19647 3 36 -c-a 5 19672 19672 25. Send out release announcements 0 19647 3 36 -c-a 5 19673 19673 26. Major releases only: Copy "run-tests" jobs in jenkins 0 19647 3 36 -c-a 5 19674 19674 27. Add the release to zenodo.org 0 19647 3 36 -c-a 5
19434 19434 Lisa Knox Lisa Knox 3103 Collapse Left Hand Nav Bar Resolved Resolved 3 2.0 2.0 2.0 19434 36 3103 374 2 2.0		19876 19876 Review Peter Amstutz 47 0 19434 3 36 -c-a 5
19462 19462 Sarah Zaranek Sarah Zaranek 326 Workbench2 78 Workbench2 Use WCAG standards to decide on new color scheme for wb2 Arvados Workbench 2 47 Resolved Resolved 3 19462 47 326 374 1		19433 19433 Change cyan color and light grey in color scheme ? Both the light grey and cyan color in WB2 are very hard to see and parse. Sarah Zaranek 326 0 19462 3 36 -c-a 5 19457 19457 Change cyan color of buttons Cyan color with white text on buttons is incredibly hard to read. Sarah Zaranek 326 0 19462 3 36 -c-a 5 19857 19857 Review Stephen Smith 2794 0 19462 3 36 -c-a 5
19849 19849 Lucas Di Pentima Lucas Di Pentima 375 Tests 59 Tests Fix arvados-cwl-conformance-tests jenkins job Resolved Resolved 3 2.0 2.0 2.0 19849 36 375 374 1 2.0		19861 19861 CWL conformance integration test failure The "federation integration":https://ci.arvados.org/job/arvados-cwl-conformance-tests/1305/label=federation,pythoncmd=python3,suite=integration/console sub-pipeline is failing for reasons other than missing docker images. Peter Amstutz 47 0 19849 3 36 -c-a 5
19438 19438 Peter Amstutz Peter Amstutz 47 Workbench2 77 Workbench2 Show resource requests for containers Resolved Resolved 3 3.0 3.0 3.0 19438 36 47 374 2 3.0		19442 19442 Review 19438-resource-panel Peter Amstutz 47 0 19438 3 36 -c-a 5
19704 19704 Peter Amstutz Peter Amstutz 47 SDKs 54 SDKs Review & merge R SDK PR Resolved Resolved 3 19704 36 47 374 6
19880 19880 Peter Amstutz Peter Amstutz 47 Workbench 56 Workbench Error page Login button sends you to "interactive login is not available" instead of logging in with LDAP Resolved Resolved 3 19880 36 47 374 1		19882 19882 Review 19880-wb1-pw-login-fix Peter Amstutz 47 0 19880 3 36 -c-a 5
19681 19681 Workbench2 77 Workbench2 registered workflows in wb2 don't show default inputs Resolved Resolved 3 2.0 2.0 2.0 19681 36 374 1 2.0
19504 19504 Stephen Smith Stephen Smith 2794 Workbench2 77 Workbench2 Breadcrumbs bar showing parent workflow for workflows steps and output collections Resolved Resolved 3 19504 36 2794 374 2		19508 19508 Review 19504-breadcrumbs Stephen Smith 2794 0 19504 3 36 -c-a 5
19783 19783 Peter Amstutz Peter Amstutz 47 Workbench2 77 Workbench2 Search in picking dialog Resolved Resolved 3 3.0 3.0 3.0 19783 36 47 374 1 3.0		19803 19803 Review 19783-picking-tweak Peter Amstutz 47 0 19783 3 36 -c-a 5
19872 19872 Peter Amstutz Peter Amstutz 47 FUSE 69 FUSE Too many open files error Resolved Resolved 3 19872 36 47 374 1		19879 19879 review 19872-mnt-cache-limits Peter Amstutz 47 0 19872 3 36 -c-a 5
19260 19260 Peter Amstutz Peter Amstutz 47 Workbench2 78 Workbench2 Project Listing shows collections incorrectly as "Public Favourites" Arvados Workbench 2 47 Resolved Resolved 3 2.0 2.0 2.0 19260 47 47 374 1 2.0
19847 19847 Peter Amstutz Peter Amstutz 47 CWL 79 CWL Choose disk cache size based on RAM request Resolved Resolved 3 0.5 0.5 0.5 19847 36 47 374 2 0.5		19850 19850 Review 19847-cwl-disk-cache-size Peter Amstutz 47 0 19847 3 36 -c-a 5
19690 19690 Lisa Knox Lisa Knox 3103 Workbench2 77 Workbench2 Project view has more options for columns Resolved Resolved 3 19690 36 3103 374 2		19729 19729 Review 19690-project-column-options Peter Amstutz 47 0 19690 3 36 -c-a 5
19851 19851 Lucas Di Pentima Lucas Di Pentima 375 Workbench2 77 Workbench2 Log panel not loading all messages Resolved Resolved 3 1.0 1.0 1.0 19851 36 375 374 1 1.0		19852 19852 Review 19851-log-panel-fix Lucas Di Pentima 375 0 19851 3 36 -c-a 5
19848 19848 Stephen Smith Stephen Smith 2794 Workbench2 77 Workbench2 Not rendering cwl_input / cwl_output Resolved Resolved 3 3.0 3.0 3.0 19848 36 2794 374 1 3.0		19854 19854 Review 19848-subprocess-json Peter Amstutz 47 0 19848 3 36 -c-a 5
19878 19878 Lucas Di Pentima Lucas Di Pentima 375 API 57 API Upgrade rails-html-sanitizer from 1.4.3 to 1.4.4 Resolved Resolved 3 19878 36 375 374 1
19709 19709 Tom Clegg Tom Clegg 3 Apply database migrations if needed when starting arvados-server boot Resolved Resolved 3 1.0 1.0 1.0 19709 36 3 374 2 1.0		19856 19856 Review 19709-boot-db-migrate Tom Clegg 3 0 19709 3 36 -c-a 5
19877 19877 API 57 API Upgrade loofah to 2.19.1 Resolved Resolved 3 19877 36 374 1
19691 19691 Lucas Di Pentima Lucas Di Pentima 375 Workbench2 77 Workbench2 Project dialog errors cause it to get stuck Resolved Resolved 3 1.0 1.0 1.0 19691 36 375 374 1 1.0		19722 19722 Review 19691-dialog-error-handling Stephen Smith 2794 0 19691 3 36 -c-a 5
19840 19840 Tom Clegg Tom Clegg 3 Docker 68 Docker Gets confused by port numbers in docker image name Resolved Resolved 3 0.5 0.5 0.5 19840 36 3 374 1 0.5		19853 19853 Review 19840-docker-port-number Tom Clegg 3 0 19840 3 36 -c-a 5
19732 19732 Lucas Di Pentima Lucas Di Pentima 375 Workbench2 77 Workbench2 Error message incorrectly displayed when adding in key-value metadata in WB2 Resolved Resolved 3 0.5 0.5 0.5 19732 36 375 374 1 0.5		19801 19801 Review 19732-properties-error-fix Peter Amstutz 47 0 19732 3 36 -c-a 5
18775 18775 Workbench2 77 Workbench2 Search in picker dialogue for selecting Projects/Files/Directories Resolved Resolved 3 8.0 8.0 8.0 18775 36 374 2 8.0
19862 19862 Lucas Di Pentima Lucas Di Pentima 375 Workbench 56 Workbench Upgrade nokogiri to 1.13.10 to address CVE-2022-23476 Resolved Resolved 3 19862 36 375 374 1
19686 19686 Brett Smith Brett Smith 79 SDKs 54 SDKs arvados.api() should return ThreadSafeApiCache Resolved Resolved 3 19686 36 79 374 6		19802 19802 Review 19686-threadsafe-api-default Brett Smith 79 0 19686 3 36 -c-a 5