Arvados

Story

Resolved

Closed

Sprint Impediments

22718

Release Arvados 3.1.1

Brett Smith

impediments

-c-a

22755

Can't apply pirca states because of duplicated package names

Lucas Di Pentima

375

impediments

-c-a

22763

Figure out why WGS-processing chr19 crashes crunch-run 3.1.0

Brett Smith

impediments

-c-a

22605 22605 Lisa Knox Lisa Knox 3103 Workbench2 77 Workbench2 Dialog box to select workflow run project opens automatically Resolved Resolved 3 22605 36 3103 459 2	22639 22639 Review 22605-open-wf-dialog Lisa Knox 3103 0 22605 3 36 -c-a 5 22681 22681 Review 22605-open-wf-dialog Peter Amstutz 47 0 22605 3 36 -c-a 5
22772 22772 Lisa Knox Lisa Knox 3103 Workbench2 77 Workbench2 Selection under the "Workflow runs" tab Resolved Resolved 3 22772 36 3103 459 1	22773 22773 Review 22772-workflow-multiselector Stephen Smith 2794 0 22772 3 36 -c-a 5
22718 22718 Brett Smith Brett Smith 79 Release Arvados 3.1.1 Resolved Resolved 3 22718 36 79 459 3	22720 22720 2. Prepare X.Y-staging branch 0 22718 3 36 -c-a 5 22721 22721 3. Ensure that developer-run-tests and developer-run-tests-doc-sdk-java-R are passing on Jenkins 0 22718 3 36 -c-a 5 22722 22722 4. Review release branch Peter Amstutz 47 0 22718 3 36 -c-a 5 22723 22723 5. Draft release notes and publish them to www-dev 0 22718 3 36 -c-a 5 22724 22724 6. Review release notes Peter Amstutz 47 0 22718 3 36 -c-a 5 22725 22725 7. Create next redmine release Peter Amstutz 47 0 22718 3 36 -c-a 5 22726 22726 8. Build RC packages 0 22718 3 36 -c-a 5 22727 22727 9. Build RC arvados/jobs image 0 22718 3 36 -c-a 5 22728 22728 10. Test installer formula / provision scripts with RC packages 0 22718 3 36 -c-a 5 22729 22729 11. Build compute image & deploy RC packages to playground 0 22718 3 36 -c-a 5 22730 22730 12. Run CWL conformance tests (jenkins) and bam-to-vcf demo pipeline (playground) 0 22718 3 36 -c-a 5 22731 22731 13. Manual testing 0 22718 3 36 -c-a 5 22732 22732 14. Approve RC for release Peter Amstutz 47 0 22718 3 36 -c-a 5 22733 22733 15. Publish Ruby gems 0 22718 3 36 -c-a 5 22734 22734 16. Update "Upgrading notes", Gemfiles to use published Ruby gems, bin/arvbox, R/DESCRIPTION, ansible arvados_pin_version 0 22718 3 36 -c-a 5 22735 22735 17. Build final release packages 0 22718 3 36 -c-a 5 22736 22736 18. Publish stable arvados/jobs Docker image 0 22718 3 36 -c-a 5 22737 22737 19. Push packages to stable 0 22718 3 36 -c-a 5 22738 22738 20. Publish Python packages 0 22718 3 36 -c-a 5 22739 22739 21. Publish Java package 0 22718 3 36 -c-a 5 22740 22740 22. Publish R package 0 22718 3 36 -c-a 5 22741 22741 23. Publish arvados/arvbox-demo image 0 22718 3 36 -c-a 5 22742 22742 24. Tag commits, fast-forward X.Y-release branch to match X.Y-staging 0 22718 3 36 -c-a 5 22743 22743 25. Ensure doc.arvados.org is up to date 0 22718 3 36 -c-a 5 22744 22744 26. Update pirca and jutro to stable release 0 22718 3 36 -c-a 5 22745 22745 27. Merge release notes (step 6) from "develop" to "main" on arvados.org 0 22718 3 36 -c-a 5 22746 22746 28. Send out release announcements 0 22718 3 36 -c-a 5 22747 22747 29. Record Jenkins config used at time of release 0 22718 3 36 -c-a 5 22748 22748 30. Add the release to zenodo.org 0 22718 3 36 -c-a 5	22719 22719 1. Build and test new tordo compute node, update third-party package pin versions 0 22718 5 36 -c-a 5
22775 22775 Brett Smith Brett Smith 79 Deployment 60 Deployment CUDA pins don't work on Debian 12 Resolved Resolved 3 22775 36 79 459 1	22776 22776 Review 22775-cuda-pins 0 22775 3 36 -c-a 5
22617 22617 Brett Smith Brett Smith 79 Deployment 60 Deployment Compute node images don't ensure encrypted partitions because of cycle with docker.socket Resolved Resolved 3 22617 36 79 459 1	22774 22774 Review 22617-fix-encrypted-partitions Brett Smith 79 0 22617 3 36 -c-a 5
22763 22763 Brett Smith Brett Smith 79 Crunch 52 Crunch Figure out why WGS-processing chr19 crashes crunch-run 3.1.0 Closed Closed 5 22763 36 79 459 1
22650 22650 Lisa Knox Lisa Knox 3103 Workbench2 77 Workbench2 Collections cannot be restored from Trash with the toolbar Resolved Resolved 3 22650 36 3103 459 1
22395 22395 Stephen Smith Stephen Smith 2794 Workbench2 77 Workbench2 Trashing collections reported to be slow Resolved Resolved 3 22395 36 2794 459 1	22576 22576 Review 22395-batch-collection-trash Stephen Smith 2794 0 22395 3 36 -c-a 5
21884 21884 Lisa Knox Lisa Knox 3103 Workbench2 77 Workbench2 Collection details edit dialog uses rich text editor Resolved Resolved 3 21884 36 3103 459 2	22752 22752 Review 21884-collection-richtext Stephen Smith 2794 0 21884 3 36 -c-a 5
20650 20650 Peter Amstutz Peter Amstutz 47 CWL 79 CWL a-c-r natively supports S3 inputs just like HTTP/S Resolved Resolved 3 20650 36 47 459 2	22301 22301 Review 20650-s3-downloader Lucas Di Pentima 375 0 20650 3 36 -c-a 5
22554 22554 Lisa Knox Lisa Knox 3103 Workbench2 77 Workbench2 Support launching workflows with optional inputs Resolved Resolved 3 22554 36 3103 459 1	22638 22638 Review 2554-wf-optional-inputs Stephen Smith 2794 0 22554 3 36 -c-a 5
22698 22698 Brett Smith Brett Smith 79 Deployment 60 Deployment Rails postinst fails with "can't shift that many" if database isn't ready Resolved Resolved 3 22698 36 79 459 1
22712 22712 Brett Smith Brett Smith 79 Deployment 60 Deployment Arvados 3.1.0 gem dependencies incompatible with Ruby 2.7 Resolved Resolved 3 22712 36 79 459 1	22749 22749 Review 22697-gem-downgrades Lucas Di Pentima 375 0 22712 3 36 -c-a 5
22627 22627 Stephen Smith Stephen Smith 2794 Workbench2 77 Workbench2 Workbench breadcrumbs do not collapse Resolved Resolved 3 22627 36 2794 459 1	22628 22628 Review 22627-breadcrumbs-collapse-bug Stephen Smith 2794 0 22627 3 36 -c-a 5
22767 22767 Peter Amstutz Peter Amstutz 47 Deployment 60 Deployment not assigning dev numbers correctly since 3.1.0 Resolved Resolved 3 22767 36 47 459 1