Story Resolved
Sprint Impediments
3185
3185
Job validation fails with no error message if runtime_constraints is nil.
Resolved
0.5
3185
36
69
1
0.5
3186
Review 3185-job-invalid-without-errors
Peter Amstutz
47
0
3185
3
36
-c-a
5
2836
2836
Radhika Chippada
Workbench UI improvements
Resolved
2.0
2836
36
72
69
6
2.0
3113
3113
Brett Smith
Some crunch tasks miss some input files and have others duplicated
Resolved
1.0
3113
36
79
69
1
1.0
3218
Review 3113-qsequence-serial
Brett Smith
79
0
3113
3
36
-c-a
5
3051
3051
Brett Smith
Support beta users
Resolved
1.0
3051
36
79
69
3
1.0
3118
3118
Ward Vandewege
fix up docker code and add some basic docker info on doc.arvados.org
Resolved
1.0
3118
36
1
69
1
1.0
3121
add build project to jenkins
Ward Vandewege
1
0
3118
3
36
-c-a
5
3120
replace old keep container with new keep
Ward Vandewege
1
0
3118
3
36
-c-a
5
3019
Fix docker installation so it can run current workbench, apiserver, sso-provider, and keep
Ward Vandewege
1
0
3118
3
36
-c-a
5
3131
add some doc about building and running our docker containers
Ward Vandewege
1
0
3118
3
36
-c-a
5
3240
add crunch-dispatch
Ward Vandewege
1
0
3118
3
36
-c-a
5
3241
add compute nodes
Ward Vandewege
1
0
3118
3
36
-c-a
5
3119
general cleanups
Ward Vandewege
1
0
3118
3
36
-c-a
5
3015
3015
Peter Amstutz
Make gatk3 pipeline template
Resolved
3.0
3015
36
47
69
6
3.0
3068
Write pipeline template
Peter Amstutz
47
0
3015
3
36
-c-a
5
3107
Run on AWS instance (4xphq/qr1hi)
Peter Amstutz
47
0
3015
3
36
-c-a
5
3066
Build docker image
Peter Amstutz
47
0
3015
3
36
-c-a
5
3069
Run on test data
Peter Amstutz
47
0
3015
3
36
-c-a
5
3067
Write scripts for each stage
Peter Amstutz
47
0
3015
3
36
-c-a
5
3220
3220
Keep server uses inappropriate HTTP status codes
Resolved
0.5
3220
36
69
1
0.5
3221
Make sure tests pass
Ward Vandewege
1
0
3220
3
36
-c-a
5
3222
Update status codes
Tom Clegg
3
0
3220
3
36
-c-a
5
3106
3106
Radhika Chippada
Workbench UI improvement - loading indicator on modals
Resolved
1.0
3106
36
72
69
6
1.0
3130
Review branch 3106-modal-loading-indicator
Tim Pierce
44
0
3106
3
36
-c-a
5
3206
3206
Peter Amstutz
[Keep] Keep proxy uses API token from its env var for PUT requests, instead of token provided by client
Resolved
1.0
3206
36
47
69
1
1.0
3204
3204
Brett Smith
Collections search box is tiny
Resolved
3204
36
79
69
1
3203
3203
Radhika Chippada
fix tutorials wrt new workbench
Resolved
0.5
3203
36
72
69
1
0.5
3213
Review branch: 3203-workbench-tutorial
0
3203
3
36
-c-a
5
3123
3123
Peter Amstutz
[Crunch] Pipeline running errors are not reported to user
Resolved
2.0
3123
36
47
69
1
2.0
3202
Review 3123-pipeline-report-job-submit-errors
Peter Amstutz
47
0
3123
3
36
-c-a
5
2377
2377
Documentation: incorrect puTTY docs
Resolved
1.0
2377
36
69
1
1.0
2369
2369
Documentation: missing step
Resolved
0.5
2369
36
69
1
0.5
3103
3103
Peter Amstutz
Collection chooser preview has checkboxes for selecting individual files, but they behave strangely and don't seem to have a function.
Resolved
0.5
3103
36
47
69
1
0.5
3078
3078
Brett Smith
arv-put adds a name link after creating a collection
Resolved
1.0
3078
36
79
69
6
1.0
3205
Review 3078-arv-put-name-links
Peter Amstutz
47
0
3078
3
36
-c-a
5
2342
2342
Peter Amstutz
Provide generic "command line wrapper" crunch script and utility classes
Resolved
1.0
2342
36
47
69
6
1.0
3122
Review 2342-run-command-wrapper
Tim Pierce
44
0
2342
3
36
-c-a
5
2380
2380
Radhika Chippada
Fix bugs in Windows SSH instructions, and split off to a separate page (use template includes to show identical workbench-side content on both).
Resolved
1.0
2380
36
72
69
1
1.0
2658
Split Windows and Unix instructions into separate pages
Radhika Chippada
72
0
2380
3
36
-c-a
5
2657
Fix up instructions for setting environment variables
Radhika Chippada
72
0
2380
3
36
-c-a
5
2381
Putty setup instructions must include a step for adding switchyard's server key to the cache. Otherwise, proxy setup just hangs forever with no feedback.
Radhika Chippada
72
0
2380
3
36
-c-a
5
3143
Review branch 2380-ssh-doc
Radhika Chippada
72
0
2380
3
36
-c-a
5
3127
3127
Clean up docker containers after they run, e.g. docker run --rm=true
Resolved
0.5
3127
36
69
1
0.5
3135
3135
Job task can create files in the host's filesystem (in the tmp dir shared between host and container) which then can't be deleted by the crunch user account on the host.
Resolved
1.0
3135
36
69
1
1.0
3151
3151
Tim Pierce
Default signature expiration time is too short to permit an upload
Resolved
0.5
3151
36
44
69
1
0.5
3152
Update permission signature TTL defaults.
Tim Pierce
44
0
3151
3
36
-c-a
5
3141
3141
Ward Vandewege
Keep logging improvements
Resolved
0.5
3141
36
1
69
1
0.5
3144
review branch 3141-keep-logging-improvements
Tim Pierce
44
0
3141
3
36
-c-a
5
3142
Keep should only complain about real problems.
Ward Vandewege
1
0
3141
3
36
-c-a
5
2873
2873
Tim Pierce
Permission links are owned by root; ability to lookup/modify is determined by current user permission on "head" object
Resolved
2.0
2873
36
44
69
6
2.0
3075
Review 2873-permission-links-ownership
Tom Clegg
3
0
2873
3
36
-c-a
5
2921
Link validators use head_uuid to determine permission to lookup or modify
Tim Pierce
44
0
2873
3
36
-c-a
5
2920
Link.create and Link.update sets link ownership to root when link_class is 'permission'
Tim Pierce
44
0
2873
3
36
-c-a
5
3099
3099
Tom Clegg
ajax-loader.gif gives 406 Not Acceptable in production mode.
Resolved
1.0
3099
36
3
69
1
1.0
3105
Review 3099-spinner-assets
Tom Clegg
3
0
3099
3
36
-c-a
5
3104
Fix asset pipeline usage
Tom Clegg
3
0
3099
3
36
-c-a
5
3076
3076
Radhika Chippada
Workbench UI Improvements: Move "help" to top nav, merge with ssh/tokens stuff, change to gear icon, call it "settings".
Resolved
3076
36
72
69
6
3081
Add Help dropdown to topnav
Radhika Chippada
72
0
3076
3
36
-c-a
5
3082
Clarify requirements
Tom Clegg
3
0
3076
3
36
-c-a
5
3085
Review 3076-topnav-help
Tim Pierce
44
0
3076
3
36
-c-a
5
2891
2891
Brett Smith
Workbench error pages should be helpful
Resolved
1.0
2891
36
79
69
1
1.0
3074
Review 2891-workbench-errors-retain-login-wip
Peter Amstutz
47
0
2891
3
36
-c-a
5
3032
Error in rendering error.html
Brett Smith
79
0
2891
3
36
-c-a
5
3092
Review 2891-improve-workbench-errors-wip
Peter Amstutz
47
0
2891
3
36
-c-a
5
3080
Workbench "not found" page links to the object type index
Brett Smith
79
0
2891
3
36
-c-a
5
3079
Render 404 for not found Collections and files
Brett Smith
79
0
2891
3
36
-c-a
5
3088
3088
Radhika Chippada
Workbench UI improvements: Run this pipeline on template should bring up project chooser.
Resolved
1.0
3088
36
72
69
6
1.0
3102
Review 3088-project-chooser-on-run-pipeline-template
Radhika Chippada
72
0
3088
3
36
-c-a
5
3049
3049
Tim Pierce
Write blog post about previous sprint
Resolved
1.0
3049
36
44
69
6
1.0
3070
Write draft, review and publish
Tim Pierce
44
0
3049
3
36
-c-a
5
3047
3047
Tom Clegg
UrlGenerationError in projects#show
Resolved
0.5
3047
36
3
69
1
0.5
2986
2986
Peter Amstutz
"arv edit {uuid}" command, with behavior like "visudo"
Resolved
1.0
2986
36
47
69
6
1.0
3053
Download json, run $EDITOR, upload updated
Peter Amstutz
47
0
2986
3
36
-c-a
5
3071
Review 2986-arv-edit
Peter Amstutz
47
0
2986
3
36
-c-a
5
3084
3084
Peter Amstutz
'arv keep put zerobytefile' gives an error
Resolved
0.5
3084
36
47
69
1
0.5
3087
3087
Peter Amstutz
'arv keep put' on an empty directory hangs
Resolved
0.5
3087
36
47
69
1
0.5
2937
2937
Brett Smith
Collections download page trips up wget on subdirectories
Resolved
1.0
2937
36
79
69
1
1.0
2879
2879
Brett Smith
Crunch uses Docker images stored in Keep, and records Keep locators used for Jobs
Resolved
1.0
2879
36
79
69
6
1.0
2922
Investigate interaction between Docker image metadata and docker export
Brett Smith
79
0
2879
3
36
-c-a
5
2998
Write script to put a Docker image in Arvados
Brett Smith
79
0
2879
3
36
-c-a
5
3006
Review 2879-docker-image-installer-wip
Brett Smith
79
0
2879
3
36
-c-a
5
2923
All Arvados stores Docker images in Keep
Brett Smith
79
0
2879
3
36
-c-a
5
3010
Review 2879-job-api-docker-images-wip
Peter Amstutz
47
0
2879
3
36
-c-a
5
3030
Review 2879-docker-image-job-reuse-wip
Peter Amstutz
47
0
2879
3
36
-c-a
5
2924
Don't reuse Jobs that used different Docker images
Brett Smith
79
0
2879
3
36
-c-a
5
2883
2883
Peter Amstutz
Interactive job log browser to sort/select task logs for diagnostic and profiling purposes
Resolved
0.5
2883
36
47
69
6
0.5
2911
Add buttons to sort log rows
Peter Amstutz
47
0
2883
3
36
-c-a
5
3008
Review 2883-job-log-viewer
Peter Amstutz
47
0
2883
3
36
-c-a
5
2910
Split job log into columns
Peter Amstutz
47
0
2883
3
36
-c-a
5
2884
2884
Peter Amstutz
Improve file selection dialog (switch projects, add preview area)
Resolved
0.5
2884
36
47
69
6
0.5
2997
Preview pane showing details of last-clicked collection
Peter Amstutz
47
0
2884
3
36
-c-a
5
3033
Ability to switch projects
Peter Amstutz
47
0
2884
3
36
-c-a
5
2902
Use selector in pipeline runner
Tom Clegg
3
0
2884
3
36
-c-a
5
2901
General purpose folder browser popup
Tom Clegg
3
0
2884
3
36
-c-a
5
3041
Review 2884-improved-picker
Peter Amstutz
47
0
2884
3
36
-c-a
5
2439
2439
Brett Smith
'df' shows permission denied for other user's FUSE mounts
Resolved
0.5
2439
36
79
69
1
0.5
3176
3176
Brett Smith
[SDKs] arv-put not writing checkpoint file that is required to resume upload.
Resolved
1.0
3176
36
79
69
1
1.0
0
-c-a
0
impediments
-c-a
July 21, 2014 18:30:11.6372239589691162 +0000