Story Resolved Closed Rejected
Sprint Impediments
3381
3381
Peter Amstutz
[Workbench] "jobs" view in Workbench shows failed job job but green progress bar
Resolved
1.0
3381
36
47
76
1
1.0
4112
Update pipeline/job page display of job status
Peter Amstutz
47
0
3381
3
36
-c-a
5
3950
Review branch: 3381-job-progress-bar-bug
Peter Amstutz
47
0
3381
3
36
-c-a
5
4042
4042
Peter Amstutz
[Crunch] run-command script supports running MxN tasks (e.g., M directories x N chromosomes)
Resolved
1.0
4042
36
47
76
2
1.0
4103
Review 4042-run-command-MxN
Peter Amstutz
47
0
4042
3
36
-c-a
5
2881
2881
Brett Smith
[OPS] Basic node manager that can start/stop compute nodes based on demand
Resolved
5.0
2881
36
79
76
2
5.0
3239
fix update_node_attributes script and/or merge its remaining functionality into crunch-dispatch
Ward Vandewege
1
0
2881
3
36
-c-a
5
3944
Review 2881-node-has-job-wip
Tom Clegg
3
0
2881
3
36
-c-a
5
3248
implement basic functionality
Ward Vandewege
1
0
2881
3
36
-c-a
5
4106
Review 2881-node-manager-wip
Brett Smith
79
0
2881
3
36
-c-a
5
3245
deploy node manager
Ward Vandewege
1
0
2881
5
36
-c-a
5
4085
4085
[Workbench] On pipeline instance page, queued jobs should have Cancel buttons
Resolved
0.5
4085
36
76
1
0.5
3825
3825
Tim Pierce
[Crunch] crunch-job should save (very) large log files without filling up tmp space
Resolved
1.0
3825
36
44
76
1
1.0
3913
Test crunch-job log output
Tim Pierce
44
0
3825
3
36
-c-a
5
3912
Rewrite crunch_job::Log to pipe output to arv-put
Tim Pierce
44
0
3825
3
36
-c-a
5
4078
Review 3825-crunch-pipe-to-arv-put-final
Tim Pierce
44
0
3825
3
36
-c-a
5
3902
3902
Radhika Chippada
[Support] Support: fix bugs and write tests second half
Resolved
5.0
3902
36
72
76
3
5.0
4115
Review 3782-stub-io-pipe
Tom Clegg
3
0
3902
3
36
-c-a
5
4063
Clean up 3782 test by stubbing "read from arv-get pipe" instead of using condemned KEEP_LOCAL_STORE
Tom Clegg
3
0
3902
3
36
-c-a
5
3261
3261
Ward Vandewege
[Keep] arv-put fails if permission system is enabled
Resolved
1.0
3261
36
1
76
1
1.0
3274
Confirm bug still exists by reproducing somewhere
Ward Vandewege
1
0
3261
3
36
-c-a
5
3429
Review 3261-keep-docker-config
Ward Vandewege
1
0
3261
3
36
-c-a
5
3626
Update docker images, esp. base and java-bwa-samtools
Ward Vandewege
1
0
3261
3
36
-c-a
5
3707
Ensure crunch-job task output collation can survive with all permission features enabled
0
3261
3
36
-c-a
5
3894
3894
Tom Clegg
[Documentation] Document the run-tests.sh program on the Hacking pages on the wiki
Resolved
1.0
3894
36
3
76
2
1.0
3930
Fix bugs in run-tests script and make it a bit less hostile
Tom Clegg
3
0
3894
3
36
-c-a
5
3936
Review 3894-gem-version
Tom Clegg
3
0
3894
3
36
-c-a
5
3933
Fix pkg_resources.VersionConflict in fuse tests
Tom Clegg
3
0
3894
3
36
-c-a
5
3924
Write "Running tests" wiki page
Tom Clegg
3
0
3894
3
36
-c-a
5
3946
Review 3894-improve-run-tests on arvados-dev
Tom Clegg
3
0
3894
3
36
-c-a
5
3970
Update "making ruby gems" wiki
Tom Clegg
3
0
3894
3
36
-c-a
5
3945
Review 3894-gem-version (take 2)
Tom Clegg
3
0
3894
3
36
-c-a
5
3990
3990
Radhika Chippada
[Workbench] "Re-run pipeline" buttons should put the new pipeline-instance in the same project as the original
Resolved
0.5
3990
36
72
76
1
0.5
4125
Review branch: 3990-owner-when-rerunning-pipeline
Radhika Chippada
72
0
3990
3
36
-c-a
5
3882
3882
Radhika Chippada
[Workbench] fiddlesticks trying to cancel job that is already cancelled
Resolved
0.5
3882
36
72
76
1
0.5
4104
Add test(s) to verify a cancelled job stays cancelled on further cancel actions.
Radhika Chippada
72
0
3882
3
36
-c-a
5
4105
Review branch: 3882-cancel-already-cancelled-job
Radhika Chippada
72
0
3882
3
36
-c-a
5
3775
3775
Tom Clegg
[Crunch] arv-crunch-job should work in local mode with an arvados-hosted repository
Resolved
1.0
3775
36
3
76
2
1.0
4059
Accept arbitrary git url as repository if --git-dir not given
Tom Clegg
3
0
3775
3
36
-c-a
5
4060
Look up fetch-url of repo via arvados API if bare repo name given in repository attr
Tom Clegg
3
0
3775
3
36
-c-a
5
4082
Review 3775-fetch-git-repo
Tom Clegg
3
0
3775
3
36
-c-a
5
3828
3828
Tom Clegg
[Keepproxy] insufficient error checking on "defer listener.Close()" lines in the tests, cf. jenkins run 846 where the keepproxy tests failed like that
Resolved
0.5
3828
36
3
76
1
0.5
4119
Review 3828-keepproxy-race
Tim Pierce
44
0
3828
3
36
-c-a
5
4012
4012
Brett Smith
[Crunch] crunch-job bandaid: use eval/retry to wrap api calls that are likely to fail a long-running job due to a transient error condition
Resolved
1.0
4012
36
79
76
1
1.0
4109
Review 4012-crunch-job-api-retries-wip
Peter Amstutz
47
0
4012
3
36
-c-a
5
4046
4046
Radhika Chippada
[API] All jobs claim to be "next in queue". Bug in queue_position calculation in services/api/app/models/job.rb. It needs to increment index.
Resolved
0.5
4046
36
72
76
1
0.5
4117
Review branch: 4046-job-queue-position
Radhika Chippada
72
0
4046
3
36
-c-a
5
3634
3634
Phil Hodgson
[Workbench] Page content is the same as where you left it when navigating (back) to it with browser history
Resolved
1.0
3634
36
80
76
1
1.0
3881
Review 3634-tab-state
Phil Hodgson
80
0
3634
3
36
-c-a
5
4080
Deliver all pages with an expired cache
Phil Hodgson
80
0
3634
3
36
-c-a
5
3880
Remember active tab panel on browser back navigation
Phil Hodgson
80
0
3634
3
36
-c-a
5
4025
4025
Radhika Chippada
[Workbench] Make it clear that "Move to project" button in the upper right of the project page moves the current project, not the current selection.
Resolved
4025
36
72
76
1
4079
Review branch: 4025-move-project-button-label
Radhika Chippada
72
0
4025
3
36
-c-a
5
4036
4036
Radhika Chippada
[Workbench] When combining collections in a project, the new collection is created in Home project, but the user is still in current project.
Resolved
4036
36
72
76
1
4066
Review branch: 4036-combine-collections-in-project-issue
Peter Amstutz
47
0
4036
3
36
-c-a
5
4016
4016
[Workbench] "Make sharing link" missing from collection pages.
Resolved
4016
36
76
1
4045
4045
[Workbench] Provenance graph display regressed (possibly with #3036) and does not connect jobs/components via input/output pdh
Rejected
0.5
4045
36
76
1
0.5
3769
3769
Peter Amstutz
[API] In crunch-dispatch, throttle by bytes_per_minute or _node_minute
Resolved
1.0
3769
36
47
76
1
1.0
4061
Review 3769-throttle-logs
Ward Vandewege
1
0
3769
3
36
-c-a
5
3909
Add throttle logic
Peter Amstutz
47
0
3769
3
36
-c-a
5
3782
3782
Tim Pierce
[Workbench] Browser prompts about long-running JavaScript when trying to view a large Job log in viewer
Resolved
0.5
3782
36
44
76
1
0.5
4034
Review 3782-stub-file-content
Tom Clegg
3
0
3782
3
36
-c-a
5
4017
Use ?size= URL parameter to limit job log data
Tim Pierce
44
0
3782
3
36
-c-a
5
3975
Review 3782-large-job-logs
Tom Clegg
3
0
3782
3
35
-c-a
5
3052
3052
Peter Amstutz
[Crunch] stdout from non-task programs invoked by crunch-job should propagate to job log.
Resolved
0.5
3052
36
47
76
1
0.5
4039
Review 3052-crunch-log-stdout
Tim Pierce
44
0
3052
3
36
-c-a
5
4000
4000
Tim Pierce
[API] "re-run with latest" yields fiddlesticks if pipeline template has been updated with new components
Resolved
1.0
4000
36
44
76
1
1.0
4047
Review 4000-rerun-pipeline-changed-template
Tim Pierce
44
0
4000
3
36
-c-a
5
4021
make PipelineInstance.copy handle exceptions gracefully
Tim Pierce
44
0
4000
3
36
-c-a
5
4004
4004
Peter Amstutz
Restore "All jobs/pipelines/collections" buttons to dashboard
Resolved
0.5
4004
36
47
76
1
0.5
4005
Review 4004-restore-dashboard-buttons
Peter Amstutz
47
0
4004
3
36
-c-a
5
4038
4038
Tim Pierce
merges to master may use "fixes #" in addition to "closes #"
Resolved
0.5
4038
36
44
76
2
0.5
3961
3961
Tim Pierce
[API] 9tee4: cannot create subproject under Home
Resolved
0.5
3961
36
44
76
1
0.5
4023
Review 3961-uuid-assignment-not-permitted
Radhika Chippada
72
0
3961
3
36
-c-a
5
4020
make ensure_unique_name to work without admin privileges
Tim Pierce
44
0
3961
3
36
-c-a
5
3866
3866
Brett Smith
[SDK] Python KeepClient needs to construct URLs smarter
Resolved
0.5
3866
36
79
76
1
0.5
3848
3848
Brett Smith
[SDK] Python SDK should always set proper version when built from git
Resolved
0.5
3848
36
79
76
1
0.5
3952
Review 3848-egg-default-git-tag-wip
Brett Smith
79
0
3848
3
36
-c-a
5
4110
Review arvados-dev branch 3848-build-packages-pyversion
Ward Vandewege
1
0
3848
3
36
-c-a
5
3889
3889
Radhika Chippada
[API] [Workbench] Refactor any functional tests that call multiple actions into either integration tests or independent functional tests.
Resolved
1.0
3889
36
72
76
1
1.0
3940
Raise exception when multiple actions are performed on the controller in functional testing
Radhika Chippada
72
0
3889
3
36
-c-a
5
3941
Identify API functional tests that are performing multiple actions on a single controller. Either fix them or convert them into integration tests.
Radhika Chippada
72
0
3889
3
36
-c-a
5
3942
Identify Workbench functional tests that are performing multiple actions on a single controller. Either fix them or convert them into integration tests.
Radhika Chippada
72
0
3889
3
36
-c-a
5
3943
Review branch: 3889-functional-testing (raising exception on controller reuse only)
Radhika Chippada
72
0
3889
3
36
-c-a
5
4001
Review branch: 3889-functional-testing
Tom Clegg
3
0
3889
3
36
-c-a
5
3616
3616
Peter Amstutz
[Workbench] Workbench uses huge amounts of RAM when user downloads a large (> 1 GiB) file.
Resolved
1.0
3616
36
47
76
1
1.0
4022
Use rails "live" feature
Tom Clegg
3
0
3616
3
36
-c-a
5
4014
Review 3616-live-stream
Peter Amstutz
47
0
3616
3
36
-c-a
5
3919
Debug streaming
Peter Amstutz
47
0
3616
3
36
-c-a
5
3871
3871
Peter Amstutz
[FUSE] Crashes on non-ASCII folder names
Resolved
1.0
3871
36
47
76
1
1.0
3904
Encode/decode filenames as utf-8
Peter Amstutz
47
0
3871
3
36
-c-a
5
4007
Review 3871-non-ascii-project-names
Peter Amstutz
47
0
3871
3
36
-c-a
5
3038
3038
Radhika Chippada
Clean up recommended/default port numbers for API server and Workbench
Resolved
1.0
3038
36
72
76
1
1.0
3958
Update all the port numbers as specified
Radhika Chippada
72
0
3038
3
36
-c-a
5
3959
Review branch: 3038-default-port-numbers
Radhika Chippada
72
0
3038
3
36
-c-a
5
3995
Review 3991-docker-workbench-address
Ward Vandewege
1
0
3038
3
36
-c-a
5
3991
Update docker scripts to set workbench_address, reset it to nil in default config
Tom Clegg
3
0
3038
3
36
-c-a
5
3899
3899
Peter Amstutz
[Crunch] crunch-job and Workbench use the new job state attribute (see #3898) instead of paying attention to (and updating) running and success flags.
Resolved
2.0
3899
36
47
76
2
2.0
3962
Update crunch-dispatch
Peter Amstutz
47
0
3899
3
36
-c-a
5
3963
Update arv-run-pipeline-instance
Peter Amstutz
47
0
3899
3
36
-c-a
5
3982
Review 3988-crunch-use-job-state
Tom Clegg
3
0
3899
3
36
-c-a
5
3921
Update crunch-job
Peter Amstutz
47
0
3899
3
36
-c-a
5
3168
3168
Peter Amstutz
[Crunch] Source git repository for a job should not be fetched into internal arvados repository over and over again even when requested node profile is not available
Resolved
0.5
3168
36
47
76
1
0.5
3986
Review 3168-crunch-git-fetch
Peter Amstutz
47
0
3168
3
36
-c-a
5
3949
3949
[SDK] arv-get consumes excessive memory on very large collections
Resolved
0.5
3949
36
76
1
0.5
3413
3413
Tim Pierce
[Keep] Keep Server accepts list of trashable blocks
Resolved
1.0
3413
36
44
76
6
1.0
3679
Implement TrashHandler
Tim Pierce
44
0
3413
3
36
-c-a
5
3890
3890
[API] dots (and probably other valid characters) are being stripped from git repository names. The name field in the output of arv repository get_all_permissions is wrong (it strips characters that are valid)
Resolved
0.5
3890
36
76
1
0.5
3187
3187
Peter Amstutz
[Workbench] Better information and features on "show pipeline instance" page
Resolved
3.0
3187
36
47
76
6
3.0
3850
Add started_at and finished_at to tasks and pipelines
Peter Amstutz
47
0
3187
3
36
-c-a
5
3862
Review 3187-pipeline-instance-page
Peter Amstutz
47
0
3187
3
36
-c-a
5
3888
Fix tests
Peter Amstutz
47
0
3187
3
36
-c-a
5
3766
Send screen capture to Tom O'Keefe to get design/layout advice
Peter Amstutz
47
0
3187
3
36
-c-a
5
3487
Show all component and job details, and overall timing stats
Peter Amstutz
47
0
3187
3
36
-c-a
5
3849
Review 3187-start-finish-timestamps-tasks-pipelines
Ward Vandewege
1
0
3187
3
36
-c-a
5
3893
3893
Brett Smith
[Documentation] Explain in public wiki how to submit good/safe support requests and bug reports without accidentally leaking private information
Resolved
0.5
3893
36
79
76
3
0.5
3925
Review wiki page
Tom Clegg
3
0
3893
3
36
-c-a
5
3898
3898
Radhika Chippada
[API] Job model has a single state attribute that can be updated and read instead of paying attention to running and success flags.
Resolved
0.5
3898
36
72
76
6
0.5
3906
Add state column
Radhika Chippada
72
0
3898
3
36
-c-a
5
3939
review 3898-job-state-attr-fixes
Ward Vandewege
1
0
3898
3
36
-c-a
5
3934
Review branch: 3898-job-state-attr
Peter Amstutz
47
0
3898
3
36
-c-a
5
3951
review 3898-job-state-attr-TC
0
3898
3
36
-c-a
5
3661
3661
Phil Hodgson
[Workbench] Add "Move" and "Copy" buttons to top of #show page for every kind of object that goes_in_folders
Resolved
0.5
3661
36
80
76
6
0.5
3845
Add the buttons and make them work
Phil Hodgson
80
0
3661
3
36
-c-a
5
3851
Add one or two new integration tests for the new buttons
Phil Hodgson
80
0
3661
3
36
-c-a
5
3852
Review 3661-copy-move-from-show
Phil Hodgson
80
0
3661
3
36
-c-a
5
3147
3147
Brett Smith
[SDKs] Python clients should automatically retry failed API and Keep requests (including timeouts), in order to survive temporary outages like server restarts and network blips.
Resolved
1.0
3147
36
79
76
1
1.0
3735
Make crunch-job retry when it calls arv-put
Brett Smith
79
0
3147
3
36
-c-a
5
3802
arv-mount exposes retry support
Brett Smith
79
0
3147
3
36
-c-a
5
3658
PySDK Collection classes expose retry support
Brett Smith
79
0
3147
3
36
-c-a
5
3659
arv-put exposes retry support
Brett Smith
79
0
3147
3
36
-c-a
5
3657
Review 3147-pysdk-retries-wip
Tim Pierce
44
0
3147
3
36
-c-a
5
3872
Review 3147-py-collection-retries-wip2
Tim Pierce
44
0
3147
3
36
-c-a
5
3338
3338
Phil Hodgson
[Workbench] Show number of items in each tab of the project page.
Resolved
0.5
3338
36
80
76
2
0.5
3854
Implement simple, generic way to get #count for each pane
Phil Hodgson
80
0
3338
3
36
-c-a
5
3860
Review 3338-tab-counts
Phil Hodgson
80
0
3338
3
36
-c-a
5
3927
3927
Tim Pierce
[API] Db migration for User.owner_uuid NOT NULL constraint
Resolved
0.5
3927
36
44
76
1
0.5
3384
3384
Tim Pierce
[Crunch] Termination of jobs due to 'Connection timed out'?
Closed
3384
36
44
76
1
0
-c-a
0
impediments
-c-a
October 09, 2014 13:45:20.9218780994415283 +0000