Arvados

Story

Resolved

Closed

Sprint Impediments

4930 4930 Peter Amstutz Peter Amstutz 47 SDKs 54 SDKs [FUSE] Design: specify behavior for writable arv-mount Resolved Resolved 3 0.5 0.5 0.5 4930 36 47 83 6 0.5	4939 4939 Review and discuss 0 4930 3 36 -c-a 5
4174 4174 Ward Vandewege Ward Vandewege 1 Documentation 58 Documentation [Documentation] Write a wiki page describing desired bug workflow Resolved Resolved 3 0.5 0.5 0.5 4174 36 1 83 1 0.5
4927 4927 Tom Clegg Tom Clegg 3 SSO 67 SSO [SSO] Decide overall single sign-on strategy Resolved Resolved 3 1.0 1.0 1.0 4927 36 3 83 6 1.0	4959 4959 Write up [[Authentication]] page https://dev.arvados.org/projects/arvados/wiki/Authentication Tom Clegg 3 0 4927 3 36 -c-a 5
4687 4687 Peter Amstutz Peter Amstutz 47 [Crunch] Support Brad Chapman to port bcbio tools and workflows to CWL Resolved Resolved 3 2.0 2.0 2.0 4687 36 47 83 6 2.0	4949 4949 Sketch out how to port bcbio-nextgen StandardPipeline Peter Amstutz 47 0 4687 3 36 -c-a 5
4929 4929 Brett Smith Brett Smith 79 [Support] Fix bugs and write tests (second half) Resolved Resolved 3 5.0 5.0 5.0 4929 36 79 83 3 5.0
4918 4918 Tom Clegg Tom Clegg 3 Workbench 56 Workbench [Workbench] Input chooser for new pipelines hides the "file choose" menu on narrow windows Resolved Resolved 3 0.5 0.5 0.5 4918 36 3 83 1 0.5
5074 5074 Brett Smith Brett Smith 79 SDKs 54 SDKs [SDKs] CLI client and Ruby SDK should recover from (and avoid creating) unreadable discovery doc cache files. Resolved Resolved 3 0.5 0.5 0.5 5074 36 79 83 1 0.5	5091 5091 Review 5074-ruby-sdk-discovery-cache-wip Peter Amstutz 47 0 5074 3 36 -c-a 5
3686 3686 Radhika Chippada Radhika Chippada 72 Workbench 56 Workbench [Workbench] Provide a sharing tab for repositories similar to setting up sharing for projects. Resolved Resolved 3 1.0 1.0 1.0 3686 36 72 83 2 1.0	4990 4990 Review branch: 3686-sharing-repositories Radhika Chippada 72 0 3686 3 36 -c-a 5 5088 5088 Review branch: 3686-sharing-repositories (one more time, for repository link in manage_account page) Please see the details regarding this update in the story. Radhika Chippada 72 0 3686 3 36 -c-a 5
4926 4926 Radhika Chippada Radhika Chippada 72 [Documentation] (recurring) Refresh user documentation Resolved Resolved 3 1.0 1.0 1.0 4926 36 72 83 2 1.0	4787 4787 [Documentation] Mention browser-based upload feature Radhika Chippada 72 0 4926 3 36 -c-a 5 4955 4955 Review branch: 4926-browser-based-upload Peter Amstutz 47 0 4926 3 36 -c-a 5 5038 5038 Review branch: 4926-getting-started Nancy Ouyang 235 0 4926 3 36 -c-a 5
4878 4878 Radhika Chippada Radhika Chippada 72 Workbench 56 Workbench [Workbench] clarify purpose of "re-run latest" button on jobs#show. Resolved Resolved 3 0.5 0.5 0.5 4878 36 72 83 1 0.5	5067 5067 Review branch: 4878-rerun-job-bcs-wip Radhika Chippada 72 0 4878 3 36 -c-a 5
5010 5010 Tim Pierce Tim Pierce 44 Workbench 56 Workbench [Workbench] Trash button on collections lists should set expires_at instead of moving to Home Resolved Resolved 3 0.5 0.5 0.5 5010 36 44 83 1 0.5	5044 5044 Review 5010-trash-button-for-collections Tim Pierce 44 0 5010 3 36 -c-a 5
4889 4889 Tim Pierce Tim Pierce 44 Crunch 52 Crunch [Crunch] Logging with a progress bar deadlocks on output Resolved Resolved 3 1.0 1.0 1.0 4889 36 44 83 1 1.0	5042 5042 Review 4889-crunch-deadlock Tim Pierce 44 0 4889 3 36 -c-a 5
4967 4967 Brett Smith Brett Smith 79 Crunch 52 Crunch [Crunch] Doesn't cope well with FUSE mounts left hanging around after killing tasks with SIGKILL Resolved Resolved 3 0.5 0.5 0.5 4967 36 79 83 1 0.5	5039 5039 Review 4967-crunch-mount-cleanup-wip Ward Vandewege 1 0 4967 3 36 -c-a 5
4942 4942 Workbench 56 Workbench [Workbench] Data Collections Tab in Projects takes too long to load or fails Closed Closed 5 0.5 0.5 0.5 4942 36 83 1 0.5
5016 5016 Peter Amstutz Peter Amstutz 47 [SDKs] Should be able to use ^C to interrupt arv-ws. Resolved Resolved 3 0.5 0.5 0.5 5016 36 47 83 1 0.5	5017 5017 Review 5016-ctrl-c-arv-ws Peter Amstutz 47 0 5016 3 36 -c-a 5
5029 5029 Brett Smith Brett Smith 79 Crunch 52 Crunch [Crunch] Job specified SDK version; log reports it was packed, but not found for installation Resolved Resolved 3 0.5 0.5 0.5 5029 36 79 83 1 0.5
4838 4838 Peter Amstutz Peter Amstutz 47 Keep 53 Keep [Keep] FUSE driver should expose files with permissions mode 0555 Resolved Resolved 3 0.5 0.5 0.5 4838 36 47 83 2 0.5	5000 5000 Review 4838-fuse-executable-files Peter Amstutz 47 0 4838 3 36 -c-a 5
4840 4840 Brett Smith Brett Smith 79 414 Request-URI Too Large after Selecting 300+ files to put into a new collection Resolved Resolved 3 1.0 1.0 1.0 4840 36 79 83 1 1.0	4950 4950 Specify a fix implementation See "note 6 in the ticket":https://arvados.org/issues/4840#note-6 Tom Clegg 3 0 4840 3 36 -c-a 5 4996 4996 Review 4840-workbench-selections-action-forms-wip Peter Amstutz 47 0 4840 3 36 -c-a 5
4928 4928 Tim Pierce Tim Pierce 44 [Support] Fix bugs and write tests (first half) Resolved Resolved 3 5.0 5.0 5.0 4928 36 44 83 3 5.0
3835 3835 Brett Smith Brett Smith 79 SDKs 54 SDKs [SDKs] Python and CLI tools should give more helpful error messages after a Keep failure Resolved Resolved 3 0.5 0.5 0.5 3835 36 79 83 1 0.5	4972 4972 Review 3835-pysdk-keep-exceptions-wip Tom Clegg 3 0 3835 3 36 -c-a 5
4523 4523 Radhika Chippada Radhika Chippada 72 Workbench 56 Workbench [Workbench] Search dialog giving error when searching in "All projects" in qr1hi Resolved Resolved 3 2.0 2.0 2.0 4523 36 72 83 1 2.0	4737 4737 Add index on owner_uuid column for all data models that include the owner_uuid column. Radhika Chippada 72 0 4523 3 36 -c-a 5 4740 4740 Add search index on all data models Radhika Chippada 72 0 4523 3 36 -c-a 5 4900 4900 Add a "file_names" column for collections data model Since searching "text" columns is too slow, we do not want to include text columns in searchable_columns. However, this would mean the collections search for file names will not be comprehensive enough without searching in "manifest_text" column. Hence we want to add a new column of type string with file names only, truncated to the allowed size. What we need: - Add a file_names column to collections data model (of size 64K or so) - Use this column when searching for "any" instead of manifest_test column - Remove text columns from searchable_columns Radhika Chippada 72 0 4523 3 36 -c-a 5 4746 4746 Review branch: 4523-search-index Radhika Chippada 72 0 4523 3 36 -c-a 5
3756 3756 Radhika Chippada Radhika Chippada 72 Workbench 56 Workbench [Workbench] As an admin user, clicking 'Show' in the user list on your own user record redirects to a project url for the user uuid instead of the user url. Resolved Resolved 3 0.5 0.5 0.5 3756 36 72 83 1 0.5	4966 4966 Review branch: 3756-show-user-button Radhika Chippada 72 0 3756 3 36 -c-a 5
4968 4968 Peter Amstutz Peter Amstutz 47 SDKs 54 SDKs [FUSE] Project directories do not refresh. Resolved Resolved 3 0.5 0.5 0.5 4968 36 47 83 1 0.5	4969 4969 Review 4968-refresh-project-dir Peter Amstutz 47 0 4968 3 36 -c-a 5
4940 4940 Tim Pierce Tim Pierce 44 Documentation 58 Documentation [Documentation] (recurring) Write blog post in first three days of sprint Resolved Resolved 3 1.0 1.0 1.0 4940 36 44 83 6 1.0
4924 4924 Peter Amstutz Peter Amstutz 47 [SDKs] Improve arv edit error handling UX Resolved Resolved 3 0.5 0.5 0.5 4924 36 47 83 1 0.5	4933 4933 Review 4924-arv-edit-error-handling Peter Amstutz 47 0 4924 3 36 -c-a 5 3655 3655 [SDKs] "arv edit" should not fail just because some special attribute (which I didn't edit) is rejected by the "update" call. Possible ways to improve: * Do not include unchanged attributes in the "update" API call. ** This fixes the bug only in the cases where the user doesn't happen to edit any uneditable attributes. * When the discovery document _does_ provide information about which fields are permitted in an update, and the user changes stuff that isn't in the schema, volunteer to omit those changes from the update. * Have the discovery document provide information about whether fields are editable or not. Do not present the non-editable fields for editing. See #3818 ** It might be desirable to _see_ those readonly attributes, though. Perhaps they could be shown in an ignored/comment block before or after the editable JSON, much like the instructions provided by "git commit"? Peter Amstutz 47 0 4924 3 36 -c-a 5 3786 3786 [SDK] `arv edit` errors should be visible after failure, even if the edited JSON is long Currently, when you edit a pipeline template using arv edit and receive an error the format is: [error] [pipeline template] [try again? y/n] The problem is that if a template is ~500 lines long, then you aren't able to see the error. One suggestion to fix this is moving the error to after pipeline template. Peter Amstutz 47 0 4924 3 36 -c-a 5
4471 4471 Crunch 52 Crunch [Crunch] srun: error: Application launch failed: Communication connection failure Resolved Resolved 3 0.5 0.5 0.5 4471 36 83 1 0.5