Arvados

Story

Resolved

Closed

Rejected

Sprint Impediments

3793 3793 Brett Smith Brett Smith 79 Crunch 52 Crunch [Crunch] Docker containers not removed consistently, filling disk Resolved Resolved 3 1.0 1.0 1.0 3793 36 79 94 1 1.0	6003 6003 Review arvados-dev branch 3793-docker-cleaner-wip Ward Vandewege 1 0 3793 3 36 -c-a 5 5857 5857 Review 3793-clean-docker-images-wip Peter Amstutz 47 0 3793 3 36 -c-a 5 5996 5996 Test Docker image cleaner in run-tests.sh Brett Smith 79 0 3793 3 36 -c-a 5 5997 5997 Deploy Docker image cleaner via Puppet Brett Smith 79 0 3793 3 36 -c-a 5 6056 6056 Review puppet branch 3793-docker-image-cleaner-wip Ward Vandewege 1 0 3793 3 36 -c-a 5
5787 5787 Peter Amstutz Peter Amstutz 47 Sample Pipelines 55 Sample Pipelines [Crunch] Add Crunch support to GATK Queue Resolved Resolved 3 1.0 1.0 1.0 5787 36 47 94 2 1.0	5877 5877 Review 5787-run-command-checkin Peter Amstutz 47 0 5787 3 36 -c-a 5	5870 5870 Test scaling performance on exome and whole genome Bryan Cosca 189 0 5787 5 36 -c-a 5
5748 5748 Tom Clegg Tom Clegg 3 Keep 53 Keep [Keep] sometimes, Keep sucks up 100% cpu and becomes really slow after a while Resolved Resolved 3 5748 36 3 94 1	5933 5933 Configurable limit on block buffers allocated at a given time Tom Clegg 3 0 5748 3 36 -c-a 5 5925 5925 Review 5748-keepstore-leak Brett Smith 79 0 5748 3 36 -c-a 5 5950 5950 review 5748-max-buffers Peter Amstutz 47 0 5748 3 36 -c-a 5 6031 6031 Review 5748-max-buffers-leak 0 5748 3 36 -c-a 5
6064 6064 Radhika Chippada Radhika Chippada 72 Workbench 56 Workbench [Workbench] [Performance] Collection#show for /collections/qr1hi-4zz18-hqfxewp0r3dsaov takes forever as it loads all the items for which this collection is the output. Resolved Resolved 3 6064 36 72 94 1	6069 6069 Review branch: 6064-collection-output-of-perf-issue Radhika Chippada 72 0 6064 3 36 -c-a 5
5829 5829 Peter Amstutz Peter Amstutz 47 SSO 67 SSO [SSO] improve UI for ldap/local account login Resolved Resolved 3 1.0 1.0 1.0 5829 36 47 94 2 1.0	5965 5965 Update sso install docs for plain email/password login Ward Vandewege 1 0 5829 3 36 -c-a 5 5936 5936 Review SSO master Ward Vandewege 1 0 5829 3 36 -c-a 5
4717 4717 Radhika Chippada Radhika Chippada 72 API 57 API [API] [SDKs] Read-only flag on keep_services table as hint to clients not to try to write. Resolved Resolved 3 1.0 1.0 1.0 4717 36 72 94 2 1.0	6040 6040 Review branch: 4717-read-only-keep-services-flag Radhika Chippada 72 0 4717 3 36 -c-a 5 5634 5634 Update Go SDK Radhika Chippada 72 0 4717 3 36 -c-a 5 5633 5633 Update Python SDK Radhika Chippada 72 0 4717 3 36 -c-a 5 5632 5632 Update API server Radhika Chippada 72 0 4717 3 36 -c-a 5
5720 5720 Radhika Chippada Radhika Chippada 72 Workbench 56 Workbench [Workbench] Search for pipeline templates breaks Resolved Resolved 3 1.0 1.0 1.0 5720 36 72 94 1 1.0	5776 5776 Review branch: 5720-ajax-loading-error Radhika Chippada 72 0 5720 3 36 -c-a 5
5915 5915 Brett Smith Brett Smith 79 Workbench 56 Workbench [Workbench] Sharing link for public collection still renders after sharing token is revoked, but then downloaded files are 0 bytes Resolved Resolved 3 5915 36 79 94 1
5645 5645 Radhika Chippada Radhika Chippada 72 Workbench 56 Workbench [Workbench] Social media optimize anonymous collections/projects/pipelines Resolved Resolved 3 0.5 0.5 0.5 5645 36 72 94 2 0.5	6001 6001 Review branch: 5645-open-graph-meta-tags Radhika Chippada 72 0 5645 3 36 -c-a 5
3454 3454 Radhika Chippada Radhika Chippada 72 API 57 API [API] Assign a system-default default docker image (instead of using the non-docker code path) if none is specified in runtime_constraints. Resolved Resolved 3 0.5 0.5 0.5 3454 36 72 94 2 0.5	5942 5942 Review branch: 3454-default-docker-image Radhika Chippada 72 0 3454 3 36 -c-a 5
5682 5682 Radhika Chippada Radhika Chippada 72 Workbench 56 Workbench [Workbench] Can't view/download files under subdirectories in stream Resolved Resolved 3 5682 36 72 94 1	5948 5948 Review branch: 5682-download-file-error Radhika Chippada 72 0 5682 3 36 -c-a 5
4467 4467 Radhika Chippada Radhika Chippada 72 Workbench 56 Workbench [Workbench] Add "select all" button to project content panes Resolved Resolved 3 0.5 0.5 0.5 4467 36 72 94 2 0.5	5916 5916 Review branch: 4467-project-contents-select-all Radhika Chippada 72 0 4467 3 36 -c-a 5
4882 4882 Tom Clegg Tom Clegg 3 Crunch 52 Crunch [Crunch] crunchstat reports surprising CPU usage when container appears and disappears Resolved Resolved 3 4882 36 3 94 1	5932 5932 Review 4882-no-host-when-container Tom Clegg 3 0 4882 3 36 -c-a 5
5745 5745 Tom Clegg Tom Clegg 3 Keep 53 Keep [Keep] keepstore should serialize file reads/writes, but not directory lookups, when -serialize=true Resolved Resolved 3 0.5 0.5 0.5 5745 36 3 94 1 0.5	5924 5924 review 5745-serialize-content-only Tom Clegg 3 0 5745 3 36 -c-a 5
5842 5842 Brett Smith Brett Smith 79 Node Manager 66 Node Manager [Node Manager] Too many nodes being started Resolved Resolved 3 5842 36 79 94 1	5931 5931 Review 5842-node-manager-tighten-successful-boot-criteria-wip Tom Clegg 3 0 5842 3 36 -c-a 5
5926 5926 Ward Vandewege Ward Vandewege 1 [API] MAX_SLOTS should be a configuration value (app/models/node.rb) Resolved Resolved 3 0.5 0.5 0.5 5926 36 1 94 2 0.5	5929 5929 review 5926-parameterize-max-slots Tom Clegg 3 0 5926 3 36 -c-a 5
5735 5735 Radhika Chippada Radhika Chippada 72 Workbench 56 Workbench [Workbench] Edit box for project description should be bigger Resolved Resolved 3 0.5 0.5 0.5 5735 36 72 94 2 0.5	5891 5891 Review branch: 5735-edit-description-box-size Radhika Chippada 72 0 5735 3 36 -c-a 5
5837 5837 Brett Smith Brett Smith 79 Documentation 58 Documentation [Documentation] (recurring) Write blog post in first three days of sprint Resolved Resolved 3 0.5 0.5 0.5 5837 36 79 94 6 0.5
5724 5724 Tom Clegg Tom Clegg 3 API 57 API [API] Advertise BlobSignatureTTL in discovery doc. Fix name/comments on default_trash_lifetime. Resolved Resolved 3 0.5 0.5 0.5 5724 36 3 94 1 0.5	5880 5880 Review 5724-blob-signature-ttl Tom Clegg 3 0 5724 3 36 -c-a 5 5879 5879 Review 5724-blob-signature-ttl at 6fc44a6 Tom Clegg 3 0 5724 3 36 -c-a 5 5859 5859 Update default config, add to discovery doc Tom Clegg 3 0 5724 3 36 -c-a 5
5752 5752 Brett Smith Brett Smith 79 SDKs 54 SDKs [SDKs] Fix unreliable image timestamp recording in arv keep docker Resolved Resolved 3 0.5 0.5 0.5 5752 36 79 94 1 0.5	5881 5881 Review 5752-arv-copy-preserve-docker-timestamps-wip Brett Smith 79 0 5752 3 36 -c-a 5
5893 5893 Tom Clegg Tom Clegg 3 Workbench 56 Workbench [Workbench] Fix unreliable repository browsing Resolved Resolved 3 0.5 0.5 0.5 5893 36 3 94 1 0.5	5894 5894 Review 5893-helper-stdin Tom Clegg 3 0 5893 3 36 -c-a 5
5562 5562 Tom Clegg Tom Clegg 3 SDKs 54 SDKs [SDKs] Fix timeout problems by switching from urllib et al. to PycURL Resolved Resolved 3 0.0 0.0 0.0 5562 36 3 94 1 0.0	5639 5639 Update test utils to mock pycurl instead of requests Tom Clegg 3 0 5562 3 36 -c-a 5 5638 5638 Update keep client library Tom Clegg 3 0 5562 3 36 -c-a 5 5637 5637 Update package dependencies Tom Clegg 3 0 5562 3 36 -c-a 5 5789 5789 Test somehow Tom Clegg 3 0 5562 3 36 -c-a 5 5847 5847 Review 5562-pycurl 0 5562 3 36 -c-a 5 5868 5868 Review 5562-pycurl-upload Peter Amstutz 47 0 5562 3 36 -c-a 5
5834 5834 Brett Smith Brett Smith 79 [API] Be careful about memory usage when responding to collections#index queries Resolved Resolved 3 0.5 0.5 0.5 5834 36 79 94 1 0.5	5871 5871 Review 5834-api-max-response-size-wip Brett Smith 79 0 5834 3 36 -c-a 5
4458 4458 Radhika Chippada Radhika Chippada 72 Workbench 56 Workbench [Workbench] Replace e-mail address in menu bar with user icon and make sure bread crumbs are visible in small window sizes Resolved Resolved 3 0.5 0.5 0.5 4458 36 72 94 1 0.5	5867 5867 Review branch: 4458-breadcrumbs-in-small-screens Radhika Chippada 72 0 4458 3 36 -c-a 5
5843 5843 Radhika Chippada Radhika Chippada 72 Workbench 56 Workbench [Workbench] Undeleteable sub-project Resolved Resolved 3 0.5 0.5 0.5 5843 36 72 94 1 0.5	5858 5858 Review branch: 5843-subproject-deletion-owner-name-constraint Radhika Chippada 72 0 5843 3 36 -c-a 5
3145 3145 Tom Clegg Tom Clegg 3 Keep 53 Keep [Keep] keepstore supports read-only flag for each volume, for cases like full, draining, mounted read-only Resolved Resolved 3 0.5 0.5 0.5 3145 36 3 94 2 0.5	5746 5746 Accept readonly flag in -volumes=... argument Tom Clegg 3 0 3145 3 36 -c-a 5 5747 5747 Set readonly flag from mount opts in FindKeepVolumes Tom Clegg 3 0 3145 3 36 -c-a 5 5750 5750 Add tests Tom Clegg 3 0 3145 3 36 -c-a 5 5751 5751 Review 3145-readonly-volumes Tom Clegg 3 0 3145 3 36 -c-a 5 3844 3844 Agressively close PUT connections when there are no writable volumes. Otherwise, the clients waste bandwidth and time uploading blocks which can not be saved (and only find out after the upload is complete). Tom Clegg 3 0 3145 3 36 -c-a 5 5869 5869 Review 3145-missing-content-length-error Peter Amstutz 47 0 3145 3 36 -c-a 5 5849 5849 Review 3145-close-early Peter Amstutz 47 0 3145 3 36 -c-a 5
5856 5856 Peter Amstutz Peter Amstutz 47 gzip.open(f) sometimes throws struct.error (unpack requires a string argument of length 4) on File handle from CollectionReader Resolved Resolved 3 5856 36 47 94 1	5864 5864 Review 5856-read-exact Peter Amstutz 47 0 5856 3 36 -c-a 5
5836 5836 Misha Zatsman Misha Zatsman 82 SDKs 54 SDKs [API] Remote API error messages should make it clear that they are remote. Resolved Resolved 3 0.5 0.5 0.5 5836 36 82 94 1 0.5
5988 5988 [API] can not create arvados repository Resolved Resolved 3 5988 36 94 1
5835 5835 Brett Smith Brett Smith 79 [SDK] arv-copy breaks with namespaced git repository names Closed Closed 5 0.5 0.5 0.5 5835 36 79 94 1 0.5