Bryan Cosca

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  • Registered on: 07/01/2014
  • Last connection: 05/22/2017

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Activity

Reported issues: 882

05/03/2017

04:03 pm Arvados Story #10112: [Crunch2][Workbench]workflow#show page (similar to pipeline_template#show page)
Showing these would be helpful:
baseCommand: [bwa, mem]
arguments: - {prefix: -t, valueFrom: $(runtime.cores)} - ...

04/28/2017

03:02 pm Arvados Wiki edit: Curoverse_Lunch (#100)

04/27/2017

03:20 pm Arvados Bug #11581 (New): a-c-r should log the command used to run the pipeline
for example, somewhere in the logs would be something like
arvados-cwl-runner --submit --project-uuid="" --name=""...

04/26/2017

07:10 pm Arvados Feature #11515: [CWL] [Workbench] Support for copying/moving pipelines
A workaround would be to do:
@arv-copy --src cluster_uuid --dst cluster_uuid --dst-git-repo any_repo pipeline_uuid...

04/21/2017

02:11 pm Arvados Wiki edit: Curoverse_Lunch (#99)

04/13/2017

05:07 pm Arvados Bug #11495: bcbio NA12878 validation runs: job re-use failure with non-existant collection
It's a missing log file.
2017-04-13 09:17:03 arvados.cwl-runner INFO: [job alignment_to_rec] reused job qr1hi-8i9s...

03/24/2017

03:31 pm Arvados Wiki edit: Curoverse_Lunch (#97)
02:29 pm Arvados Wiki edit: Curoverse_Lunch (#96)
02:29 pm Arvados Wiki edit: Curoverse_Lunch (#95)

03/17/2017

02:12 pm Arvados Story #11285 (New): Update Pipeline Optimization wiki with CWL/Crunchv2
update https://dev.arvados.org/projects/arvados/wiki/Pipeline_Optimization with CWL references instead of pipeline te...

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