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Tom Schoonjans

  • Login: tomschoonjans
  • Registered on: 10/04/2021
  • Last connection: 02/14/2023

Issues

open closed Total
Assigned issues 0 0 0
Reported issues 3 2 5

Activity

02/14/2023

05:16 PM Arvados Bug #19962: singularity crunch-runner jobs cannot deal with a very large number of bind mounts
We can now confirm that your proposed workaround works, by adding our own `SINGULARITY_BIND` variable to the `EnvVarR... Tom Schoonjans

01/20/2023

01:30 PM Arvados Bug #19962 (New): singularity crunch-runner jobs cannot deal with a very large number of bind mounts
We have recently increasing the number of inputs to one of our workflow steps and ran into a problem when the number ... Tom Schoonjans

10/04/2022

01:57 PM Arvados Task #19587 (New): arvados-python-client: remove dependency on future
The future package (https://pypi.org/project/future) has not seen releases for almost three years and is currently th... Tom Schoonjans

09/23/2022

12:35 PM Arvados Bug #19571 (Resolved): arvados-cwl-runner scattering bug
Hi all,
The attached simple CWL workflow and inputs file returns the following error when run with arvados-cwl-r...
Tom Schoonjans

12/07/2021

09:35 AM Arvados Bug #18489: CWL: Intermittent Singularity startup failures
A PR has been opened at https://github.com/sylabs/singularity/pull/458
Hope it gets merged in soon.
Many thanks...
Tom Schoonjans
09:32 AM Arvados Bug #18486: Docker containers are always removed
Peter Amstutz wrote:
> You want the (stopped) containers themselves to stick around, not just the images? In genera...
Tom Schoonjans

11/29/2021

04:35 PM Arvados Bug #18489: CWL: Intermittent Singularity startup failures
Peter Amstutz wrote:
> Just to confirm, slurm is scheduling more than one job at a time on these nodes? E.g. with 4...
Tom Schoonjans
03:41 PM Arvados Bug #18489 (Resolved): CWL: Intermittent Singularity startup failures
We recently started testing a simple CWL workflow in Arvados Crunch 2.3.1. The jobs are executed on a Slurm cluster c... Tom Schoonjans
02:02 PM Arvados Bug #18486 (New): Docker containers are always removed
Observed in Arvados 2.3.1:
When trying to debug a CWL workflow running on the Docker container runtime, it appears...
Tom Schoonjans

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