Jiayong Li

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04/26/2018

06:12 PM Lightning Story #13376: Test the effect of phasing imputation workflow
Keldin Sergheyev wrote:
> This is the python script that I used to remove positions from GIAB. This version has no e...
03:31 PM Lightning Task #13378 (Resolved): review #13336
03:31 PM Lightning Story #13336 (Feedback): Implement VCF with BED file conversion to FastJ
lgtm
03:20 PM Lightning Story #13376: Test the effect of phasing imputation workflow
Note that in the imputed vcf, the original annotations are dropped. For example, in NA12878
unphased:...

04/25/2018

08:31 PM Lightning Story #13336: Implement VCF with BED file conversion to FastJ
Now that I think about it, Abram can probably do the following...
07:37 PM Lightning Story #13336: Implement VCF with BED file conversion to FastJ
...

04/20/2018

05:41 PM Lightning Story #13376: Test the effect of phasing imputation workflow
Also beagle includes the following quality information in the imputed vcf:...
04:04 PM Lightning Story #13376 (In Progress): Test the effect of phasing imputation workflow
04:04 PM Lightning Story #13376: Test the effect of phasing imputation workflow
Some sample lines of GS12877.
unphased:...
03:59 PM Lightning Story #13376 (New): Test the effect of phasing imputation workflow

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