Jiayong Li

  • Email:
  • Registered on: 06/18/2015
  • Last connection: 04/28/2017

Projects

Activity

Reported issues: 135

04/26/2017

07:42 pm Arvados Bug #11557: [CWL] arvados-cwl-runner with job reuse doesn't put the jobs/output collections in th...
Log collections and output collections can be copied to the new project in a straightforward way, I think the tricky ...
05:29 pm Arvados Bug #11557 (New): [CWL] arvados-cwl-runner with job reuse doesn't put the jobs/output collections...
Right now aravados-cwl-runner doesn't put the jobs/output collections in the designated project if the jobs are reuse...

04/19/2017

02:31 pm Arvados Feature #11515 (New): [CWL] [Workbench] Support for copying/moving pipelines
A common practice for writing a pipeline is to first test it in a private project, e.g. Home, because we don't want t...

03/16/2017

01:43 am Arvados Bug #9588 (Resolved): [CWL] cwl-runner parses nested arrays repetively
This is no longer an issue.

09/23/2016

05:30 pm Arvados Feature #10123 (New): [Workbench] [UNC] Copying collections also copies metadata
UNC organizes/queries data using tags. Right now copying a collection only copies data, not metadata. UNC thought it ...

07/13/2016

05:06 pm Arvados Bug #9588: [CWL] cwl-runner parses nested arrays repetively
Done. https://github.com/common-workflow-language/cwltool/issues/124
04:48 pm Arvados Bug #9588 (Resolved): [CWL] cwl-runner parses nested arrays repetively
_nested-array.cwl_...

06/23/2016

02:47 pm Arvados Bug #9485 (Resolved): [bcbio] Changing truth vcf/bed prevents variant calling jobs being reused i...
The cwl workflow generated by bcbio_vm.py has variant calling steps "batch_for_variantcall.cwl", "get_parallel_region...

06/17/2016

03:06 pm Arvados Wiki edit: Curoverse_Lunch_Pizza_preferences (#13)

06/13/2016

09:00 pm Arvados Bug #9401 (Closed): f48sn "cannot allocate memory" error when running cwl
Running an exome pipeline bwa_gatk_hu34D5B9 on f48sn
https://workbench.f48sn.arvadosapi.com/pipeline_instances/f48sn...

Also available in: Atom