10/05/2017

10:03 pm Arvados Bug #12410 (New): Different help listing for 'arvados-cwl-runner'

@arvados-cwl-runner@ has a different help listings depending on whether @arvados-cwl-runner@ or @arvados-cwl-runner -...

09/26/2017

03:47 pm Lightning Bug #12319 (Closed): cgfv3 files have errors in last tile path (0x35e)

We've decided to use the CWL as the 'ground truth'. This will recreate the SGLF and recreate the CGF. Conversion to...

08:48 am Lightning Bug #12319: cgfv3 files have errors in last tile path (0x35e)

For all but 20 of the 182, recalculating the bands with the "fjt":https://github.com/curoverse/l7g/tree/master/tools/...

09/25/2017

04:34 pm Arvados Feature #12320 (New): Access Arvados projects under the "by_id" directory in keep mount

One can access collections either by their portable data hash or UUID from the "by_id" directory in the keep mount. ...

04:25 pm Lightning Bug #12319 (In Progress): cgfv3 files have errors in last tile path (0x35e)

There are 182 (out of the total 720) that have a corrupted last tile path (0x35e):...

04:02 pm Lightning Bug #12319 (Closed): cgfv3 files have errors in last tile path (0x35e)

Some of the cgfv3 files located in "l7g Data":https://workbench.su92l.arvadosapi.com/collections/su92l-4zz18-6dkjzstl...

09/13/2017

04:30 pm Lightning Bug #12245 (New): pasta rotini-fastj does not handle tagset without ending newline

There is a bug in the pasta rotini-fastj conversion where if the tagset provided does not have a trailing newline, th...

04:21 pm Lightning Task #12139 (Closed): Create GRCh38 tile assembly

There is an hg38 tile assembly in the "assembly collection in keep":https://workbench.su92l.arvadosapi.com/collection...

08/25/2017

03:56 pm Lightning Task #12171 (New): Create tests for 'tile-npy' programs

There should be some testing for the programs in the "tile-npy":https://github.com/curoverse/l7g/tree/master/tools/ti...

01:49 pm Lightning Task #12111 (Closed): Tool to identify which mitochondrial reference an input genome file (gVCF, ...

A rudimentary version is on "github.com/curoverse/l7g/tools/which-ref":https://github.com/curoverse/l7g/tree/master/t...