Arvados

08/21/2018

01:07 PM Lightning Story #14085 (Closed): [CWL] Create VCF + BED to gVCF pipeline

I completely forgot this had already been done. See #13425.
* "CWL VCF + BED to gVCF":https://github.com/curoverse... Abram Connelly

12:15 PM Lightning Story #14085 (Closed): [CWL] Create VCF + BED to gVCF pipeline

Create a CWL pipeline to convert a VCF file with an associated BED file of homozygous reference regions to a gVCF fil... Abram Connelly

08/06/2018

03:43 PM Lightning Story #13756: Convert 10 Harvard PGP GFF to CGF [CWL]

As a very very rough estimate, the cost should be in the ~$1.50 per genome processed.
The total runtime of the 100... Abram Connelly

03:09 PM Lightning Story #13756 (Closed): Convert 10 Harvard PGP GFF to CGF [CWL]

Abram Connelly

03:09 PM Lightning Story #13756: Convert 10 Harvard PGP GFF to CGF [CWL]

Changes have been pushed and merged Abram Connelly

03:08 PM Lightning Story #13756: Convert 10 Harvard PGP GFF to CGF [CWL]

A test run of 100 was pushed through to test.
* "pipeline":https://workbench.su92l.arvadosapi.com/container_reques... Abram Connelly

03:09 PM Lightning Task #13915 (Closed): Review #13756, branch 13756-test-10-harvard-pgp-gff-to-cgf

Abram Connelly

08/01/2018

08:38 AM Lightning Story #13756: Convert 10 Harvard PGP GFF to CGF [CWL]

I think the expressiontool CWL pipelines don't show up in workbench and that's why I was having trouble finding the l... Abram Connelly

07/26/2018

10:29 AM Lightning Task #13915 (Closed): Review #13756, branch 13756-test-10-harvard-pgp-gff-to-cgf

Abram Connelly

10:24 AM Lightning Story #13756: Convert 10 Harvard PGP GFF to CGF [CWL]

A test pipeline for the 10 datasets was successfully run. The "pipeline":https://workbench.su92l.arvadosapi.com/conta... Abram Connelly