Abram Connelly

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08/21/2018

01:07 PM Lightning Story #14085 (Closed): [CWL] Create VCF + BED to gVCF pipeline
I completely forgot this had already been done. See #13425.
* "CWL VCF + BED to gVCF":https://github.com/curoverse...
12:15 PM Lightning Story #14085 (Closed): [CWL] Create VCF + BED to gVCF pipeline
Create a CWL pipeline to convert a VCF file with an associated BED file of homozygous reference regions to a gVCF fil...

08/08/2018

07:31 PM Lightning Story #14000 (In Progress): Parallelize CWL SGLF tile library creation
The common workflow library tile library creation currently is serial. Add a feature to accept a number of cores to u...

08/06/2018

03:43 PM Lightning Story #13756: Convert 10 Harvard PGP GFF to CGF [CWL]
As a very very rough estimate, the cost should be in the ~$1.50 per genome processed.
The total runtime of the 100...
03:09 PM Lightning Story #13756 (Closed): Convert 10 Harvard PGP GFF to CGF [CWL]
03:09 PM Lightning Task #13915 (Closed): Review #13756, branch 13756-test-10-harvard-pgp-gff-to-cgf
03:09 PM Lightning Story #13756: Convert 10 Harvard PGP GFF to CGF [CWL]
Changes have been pushed and merged
03:08 PM Lightning Story #13756: Convert 10 Harvard PGP GFF to CGF [CWL]
A test run of 100 was pushed through to test.
* "pipeline":https://workbench.su92l.arvadosapi.com/container_reques...

08/01/2018

08:38 AM Lightning Story #13756: Convert 10 Harvard PGP GFF to CGF [CWL]
I think the expressiontool CWL pipelines don't show up in workbench and that's why I was having trouble finding the l...

07/26/2018

10:29 AM Lightning Task #13915 (Closed): Review #13756, branch 13756-test-10-harvard-pgp-gff-to-cgf

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