Abram Connelly

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06/15/2018

09:51 PM Lightning Story #13506 (Closed): Update Genotype conversion tool
09:51 PM Lightning Task #13614 (Closed): Review branch of 13506
The review process timed out. This branch has been pushed without review.
09:50 PM Lightning Story #13506: Update Genotype conversion tool
The CGF conversion tools will be updated to accommodate the genotype files and will be incorporated into these tools ...

06/13/2018

05:10 AM Lightning Story #13506: Update Genotype conversion tool
There's a problem with the CGF creation step. The 'low quality' band information's interpretation should be inverted ...

06/12/2018

07:12 PM Lightning Task #13614 (Closed): Review branch of 13506
Branch is named 13506-gtconv-genotyping-to-sglf-and-cgf-conversion.
05:05 PM Lightning Story #13506 (In Progress): Update Genotype conversion tool
This tool is nearing completion. Once some local tests are done with a set of 10 Harvard PGP 23andMe genotyping file...

05/24/2018

09:29 AM Lightning Task #13380 (Closed): fastj checks wf in cwl
Added license headers to source files.
I had troubles untangling the commit history because of errors in the commi...

05/23/2018

05:27 PM Lightning Task #13380: fastj checks wf in cwl
The @--disable-reuse@ is really for testing purposes. The @cwl-run/submit-check-fastj-wf.sh@ is only there as an exa...

05/21/2018

08:46 AM Lightning Story #13506 (Closed): Update Genotype conversion tool
The genotyping conversion tool, @gtconv@, was never properly tested or used. Update this tool to be able to convert ...
04:05 AM Lightning Bug #13452 (Closed): pasta does not properly report "startTile" flag field when tilepath is only one tile long

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