Abram Connelly
- Email: abram.connelly@gmail.com
- Registered on: 04/22/2014
- Last connection: 08/21/2018
Issues
- Assigned issues: 7
- Reported issues: 183
Projects
- Arvados (Reporter, 04/22/2014)
- GET-Evidence (Manager, 05/01/2014)
- Arvados Genomics Benchmark (Manager, 12/10/2015)
Activity
08/21/2018
- 01:07 PM Lightning Story #14085 (Closed): [CWL] Create VCF + BED to gVCF pipeline
- I completely forgot this had already been done. See #13425.
* "CWL VCF + BED to gVCF":https://github.com/curoverse... - 12:15 PM Lightning Story #14085 (Closed): [CWL] Create VCF + BED to gVCF pipeline
- Create a CWL pipeline to convert a VCF file with an associated BED file of homozygous reference regions to a gVCF fil...
08/06/2018
- 03:43 PM Lightning Story #13756: Convert 10 Harvard PGP GFF to CGF [CWL]
- As a very very rough estimate, the cost should be in the ~$1.50 per genome processed.
The total runtime of the 100... - 03:09 PM Lightning Story #13756 (Closed): Convert 10 Harvard PGP GFF to CGF [CWL]
- 03:09 PM Lightning Task #13915 (Closed): Review #13756, branch 13756-test-10-harvard-pgp-gff-to-cgf
- 03:09 PM Lightning Story #13756: Convert 10 Harvard PGP GFF to CGF [CWL]
- Changes have been pushed and merged
- 03:08 PM Lightning Story #13756: Convert 10 Harvard PGP GFF to CGF [CWL]
- A test run of 100 was pushed through to test.
* "pipeline":https://workbench.su92l.arvadosapi.com/container_reques...
08/01/2018
- 08:38 AM Lightning Story #13756: Convert 10 Harvard PGP GFF to CGF [CWL]
- I think the expressiontool CWL pipelines don't show up in workbench and that's why I was having trouble finding the l...
07/26/2018
- 10:29 AM Lightning Task #13915 (Closed): Review #13756, branch 13756-test-10-harvard-pgp-gff-to-cgf
- 10:24 AM Lightning Story #13756: Convert 10 Harvard PGP GFF to CGF [CWL]
- A test pipeline for the 10 datasets was successfully run. The "pipeline":https://workbench.su92l.arvadosapi.com/conta...
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