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2014-07-16 Sprint
closed
07/16/2014
100%
100 issues
(
100 closed
— 0 open)
Time tracking
Estimated time
122
.50
hours
Issues by
Tracker
Status
Priority
Author
Assigned To
Category
Bug
24/24
Support
1/1
Task
62/62
Idea
13/13
Related issues
Bug #2369
: Documentation: missing step
Actions
Bug #2377
: Documentation: incorrect puTTY docs
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Bug #2380
: Fix bugs in Windows SSH instructions, and split off to a separate page (use template includes to show identical workbench-side content on both).
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Bug #2439
: 'df' shows permission denied for other user's FUSE mounts
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Bug #2891
: Workbench error pages should be helpful
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Bug #2937
: Collections download page trips up wget on subdirectories
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Bug #3047
: UrlGenerationError in projects#show
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Bug #3084
: 'arv keep put zerobytefile' gives an error
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Bug #3087
: 'arv keep put' on an empty directory hangs
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Bug #3099
: ajax-loader.gif gives 406 Not Acceptable in production mode.
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Bug #3103
: Collection chooser preview has checkboxes for selecting individual files, but they behave strangely and don't seem to have a function.
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Bug #3113
: Some crunch tasks miss some input files and have others duplicated
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Bug #3118
: fix up docker code and add some basic docker info on doc.arvados.org
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Bug #3123
: [Crunch] Pipeline running errors are not reported to user
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Bug #3127
: Clean up docker containers after they run, e.g. docker run --rm=true
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Bug #3135
: Job task can create files in the host's filesystem (in the tmp dir shared between host and container) which then can't be deleted by the crunch user account on the host.
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Bug #3141
: Keep logging improvements
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Bug #3151
: Default signature expiration time is too short to permit an upload
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Bug #3176
: [SDKs] arv-put not writing checkpoint file that is required to resume upload.
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Bug #3185
: Job validation fails with no error message if runtime_constraints is nil.
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Bug #3203
: fix tutorials wrt new workbench
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Bug #3204
: Collections search box is tiny
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Bug #3206
: [Keep] Keep proxy uses API token from its env var for PUT requests, instead of token provided by client
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Bug #3220
: Keep server uses inappropriate HTTP status codes
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Support #3051
: Support beta users
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Task #2381
: Putty setup instructions must include a step for adding switchyard's server key to the cache. Otherwise, proxy setup just hangs forever with no feedback.
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Task #2657
: Fix up instructions for setting environment variables
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Task #2658
: Split Windows and Unix instructions into separate pages
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Task #2901
: General purpose folder browser popup
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Task #2902
: Use selector in pipeline runner
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Task #2910
: Split job log into columns
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Task #2911
: Add buttons to sort log rows
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Task #2920
: Link.create and Link.update sets link ownership to root when link_class is 'permission'
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Task #2921
: Link validators use head_uuid to determine permission to lookup or modify
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Task #2922
: Investigate interaction between Docker image metadata and docker export
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Task #2923
: All Arvados stores Docker images in Keep
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Task #2924
: Don't reuse Jobs that used different Docker images
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Task #2929
: Remove extra 'component summary' row from table after deleting a pipeline instance
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Task #2997
: Preview pane showing details of last-clicked collection
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Task #2998
: Write script to put a Docker image in Arvados
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Task #3006
: Review 2879-docker-image-installer-wip
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Task #3008
: Review 2883-job-log-viewer
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Task #3010
: Review 2879-job-api-docker-images-wip
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Task #3019
: Fix docker installation so it can run current workbench, apiserver, sso-provider, and keep
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Task #3030
: Review 2879-docker-image-job-reuse-wip
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Task #3032
: Error in rendering error.html
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Task #3033
: Ability to switch projects
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Task #3041
: Review 2884-improved-picker
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Task #3053
: Download json, run $EDITOR, upload updated
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Task #3066
: Build docker image
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Task #3067
: Write scripts for each stage
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Task #3068
: Write pipeline template
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Task #3069
: Run on test data
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Task #3070
: Write draft, review and publish
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Task #3071
: Review 2986-arv-edit
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Task #3074
: Review 2891-workbench-errors-retain-login-wip
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Task #3075
: Review 2873-permission-links-ownership
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Task #3079
: Render 404 for not found Collections and files
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Task #3080
: Workbench "not found" page links to the object type index
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Task #3081
: Add Help dropdown to topnav
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Task #3082
: Clarify requirements
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Task #3085
: Review 3076-topnav-help
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Task #3092
: Review 2891-improve-workbench-errors-wip
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Task #3096
: Review pete-fixes branch
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Task #3102
: Review 3088-project-chooser-on-run-pipeline-template
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Task #3104
: Fix asset pipeline usage
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Task #3105
: Review 3099-spinner-assets
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Task #3107
: Run on AWS instance (4xphq/qr1hi)
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Task #3119
: general cleanups
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Task #3120
: replace old keep container with new keep
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Task #3121
: add build project to jenkins
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Task #3122
: Review 2342-run-command-wrapper
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Task #3130
: Review branch 3106-modal-loading-indicator
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Task #3131
: add some doc about building and running our docker containers
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Task #3142
: Keep should only complain about real problems.
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Task #3143
: Review branch 2380-ssh-doc
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Task #3144
: review branch 3141-keep-logging-improvements
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Task #3152
: Update permission signature TTL defaults.
Actions
Task #3186
: Review 3185-job-invalid-without-errors
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Task #3202
: Review 3123-pipeline-report-job-submit-errors
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Task #3205
: Review 3078-arv-put-name-links
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Task #3213
: Review branch: 3203-workbench-tutorial
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Task #3218
: Review 3113-qsequence-serial
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Task #3221
: Make sure tests pass
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Task #3222
: Update status codes
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Task #3240
: add crunch-dispatch
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Task #3241
: add compute nodes
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Idea #2342
: Provide generic "command line wrapper" crunch script and utility classes
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Idea #2836
: Workbench UI improvements
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Idea #2873
: Permission links are owned by root; ability to lookup/modify is determined by current user permission on "head" object
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Idea #2879
: Crunch uses Docker images stored in Keep, and records Keep locators used for Jobs
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Idea #2883
: Interactive job log browser to sort/select task logs for diagnostic and profiling purposes
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Idea #2884
: Improve file selection dialog (switch projects, add preview area)
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Idea #2986
: "arv edit {uuid}" command, with behavior like "visudo"
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Idea #3015
: Make gatk3 pipeline template
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Idea #3049
: Write blog post about previous sprint
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Idea #3076
: Workbench UI Improvements: Move "help" to top nav, merge with ssh/tokens stuff, change to gear icon, call it "settings".
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Idea #3078
: arv-put adds a name link after creating a collection
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Idea #3088
: Workbench UI improvements: Run this pipeline on template should bring up project chooser.
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Idea #3106
: Workbench UI improvement - loading indicator on modals
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