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2014-08-06 Sprint
closed
08/06/2014
100%
118 issues
(
118 closed
— 0 open)
Time tracking
Estimated time
129
.50
hours
Issues by
Tracker
Status
Priority
Author
Assigned To
Category
Bug
19/19
Feature
3/3
Support
2/2
Task
80/80
Idea
14/14
Related issues
Bug #3072
: [Workbench] Showing the empty collection in Workbench gives an error page
Actions
Bug #3124
: [API] Job creation 'filters' chokes on invalid commit hash
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Bug #3132
: [Keep] Putting data into Keep tutorial: not able to add the VCF data to keep
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Bug #3160
: [Workbench] When copying an unnamed pipeline instance, use a blank name instead of "Copy of unnamed pipeline".
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Bug #3170
: [Workbench] Automatic reloading of pipeline instance page interferes with ajax loading of tabs - should just reload the components tab, not the whole page.
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Bug #3182
: [Tests] UsersTest#test_setup_the_active_user test fails too much.
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Bug #3200
: [Workbench] Improve AJAX error reporting
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Bug #3214
: [API] Unprivileged user can create subprojects under projects they do not own (but cannot modify the subproject once created)
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Bug #3286
: [Workbench] "Home" icon next to "Projects" dropdown should link to dashboard, instead of opening the projects dropdown.
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Bug #3351
: [SDK] arv-put hangs during remote upload
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Bug #3363
: [Docker] quick fix for SSO - google openid has been deprecated, default to using Curoverse SSO server
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Bug #3370
: [Crunch] Job fails with "KeyError: 'CRUNCH_SRC'"
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Bug #3372
: [Sample pipelines] Add title and description fields to user-provided input parameters in sample pipelines
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Bug #3415
: [SDKs] Report the server-provided error message when API calls fail in Python SDK
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Bug #3425
: [Crunch] Task outputs chopped at 4KB.
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Bug #3442
: Can re-use job where the job is readable but the output collection isn't.
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Bug #3443
: [API] Read permissions for collections should be obtainable via name links
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Bug #3444
: [API] Get rid of obsolete "folder" usage in API and Workbench (after 249979c is merged)
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Bug #3466
: arv-get failing to download entire file from a collection.
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Feature #3129
: [Workbench] Show API token copy-and-paste block in a pop-up accessible from every page
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Feature #3219
: [Docker] further docker image improvements
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Feature #3463
: [workbench] add e-mail address to the user list in the sharing dialog
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Support #3263
: [Support] Curate bug reports
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Support #3320
: [Sample Pipelines] Assist pipeline porting efforts in the science team
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Task #2665
: API server lets all known users list basic information about other users
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Task #2749
: Workbench has interface to share folders between users of instance
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Task #3055
: Add explanatory text to the examples on the "Advanced" tab
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Task #3056
: Display state of a pipeline instance shown in folder contents view.
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Task #3059
: Indicate difference between "queued" and "nothing submitted yet" jobs on pipeline instance status page
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Task #3064
: Show loading spinner when waiting for infinite scroll request
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Task #3065
: Add "Move to a different project..." action to the selection dropdown on the project page (bring up folder chooser, just like the "move project..." button)
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Task #3083
: List of my/shared projects should show project descriptions in the list, instead of tooltips
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Task #3116
: Review 2985-workbench-ui
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Task #3158
: Review 2985-shared-projects-descriptions
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Task #3181
: Review branch 3140-project-content-tabs
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Task #3194
: [Blocker] Clarify requirements/implementation
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Task #3207
: Error while adding public_key to a new authorized key
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Task #3215
: Arvados does not tell you your SSH login name
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Task #3217
: Review 2044-api-users-index-wip
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Task #3237
: Review 3072-empty-collection-bugfix
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Task #3238
: Review 2044-workbench-project-sharing-wip
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Task #3251
: When updating parameters on the pipeline instance page, AJAX errors result in "loading forever" behavior instead of displaying an error message
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Task #3253
: add shell image
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Task #3264
: Curate bugs during the first half of the sprint
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Task #3265
: Curate bugs during the second half of the sprint
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Task #3267
: Review 3235
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Task #3271
: Implement DELETE request
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Task #3273
: Add configuration flags for DELETE.
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Task #3276
: Tab load failure should result in an error message and a "reload" button in the tab pane.
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Task #3277
: Review latest 3140-project-content-tabs
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Task #3288
: Review 3252-py-sdk-install-docs-wip
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Task #3289
: Review 3160-copy-unnamed-pipeline
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Task #3290
: Review 3214-permission-to-use-owner-uuid
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Task #3291
: Review 3170-refresh-tab-pane
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Task #3292
: Clean up tab loading javascript
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Task #3293
: Modify periodic refresh to load only tab content, not page.
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Task #3294
: Top nav "search" button opens a collection chooser
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Task #3295
: Make a chooser modal that shows multiple types
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Task #3305
: Turn off "projects" drop-down in chooser unless requested by caller
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Task #3306
: Replace preview pane with an "expand/collapse" button that shows details (e.g., collection contents) inline with the list of items
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Task #3310
: Review branch: 3138-wiselinks
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Task #3322
: Review 3200-ajax-error-handling-wip
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Task #3323
: Help Bryan
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Task #3325
: Split documentation into separate Workbench and CLI sections
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Task #3330
: add compute nodes
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Task #3331
: add crunch-dispatch
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Task #3332
: add local git trees
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Task #3337
: review 3219-further-docker-improvements
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Task #3345
: Remove all uses of :footer_js from workbench
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Task #3350
: Review 3349-install-docs
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Task #3357
: Review 3193-manage-account
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Task #3364
: Split home button and projects dropdown
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Task #3366
: Review 3286-home-button
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Task #3374
: Test patched Python package
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Task #3375
: Review 3351-keep-timeout
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Task #3376
: Test/fix infinite scroll
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Task #3377
: Hide object type separators when no objects of that type are displayed
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Task #3379
: Review 2985-selection-button-move-copy
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Task #3389
: Fix up "filter by project" dropdown
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Task #3390
: Bring up search dialog by pasting uuid into top nav
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Task #3392
: Review 3232-user-guide-updates
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Task #3393
: Update build a pipeline template documentation
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Task #3394
: Pass the search string from template to the input chooser popup
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Task #3395
: Show selected project in project-filter dropdown title
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Task #3396
: Show only projects, not groups (and fix section heading)
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Task #3398
: Trigger search update on keyup paste change
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Task #3399
: Special case for pasting UUID
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Task #3404
: [Tutorial] Update "Getting an API token" section to point to the new "manage account" page
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Task #3420
: Search modal bugs
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Task #3422
: Review 2769-keep-delete-request
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Task #3423
: Review 3016-pipeline-template-search-string
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Task #3424
: Update the schema doc
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Task #3426
: Review 3425-truncated-output
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Task #3447
: Individual files in search preview should not be clickable: you can't do anything with them after selecting.
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Task #3449
: Review 3442-no-reuse-job-when-output-unreadable
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Task #3450
: Review 3443-read-collections-from-name-links
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Task #3451
: Verify Abram's problem is fixed
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Task #3464
: review #3463
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Task #3471
: Add title and search_for for GATK pipeline inputs.
Actions
Task #3478
: Review 3415-py-sdk-api-errors-wip
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Task #3492
: Add title and description fields to pipeline template schema doc
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Task #3494
: Review 3444-no-folders
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Task #3495
: Add link_name to GATK3 pipeline
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Task #3533
: Review 2769-disable-delete-flag
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Idea #2044
: [Workbench] interface lets users share a project folder with other users on this instance
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Idea #2769
: [Keep] Keep supports DELETE requests
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Idea #2985
: [Workbench] Workbench usability and feature improvements
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Idea #3016
: [Workbench] Pipeline template can specify a search string to restrict choices shown in collection chooser dialog
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Idea #3057
: [Sample pipelines] Example pipelines should have link_name for all of the default inputs (samtools etc)
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Idea #3138
: [Workbench] UI improvements: Persistent top nav between pages
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Idea #3140
: [Workbench] UI enhancements: Split project contents into separate tabs and clean up "contents" partial
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Idea #3193
: [Workbench] Regular user should view VMs and repositories, and manage tokens and SSH keys, on an approachable "access" page instead of relying on the generic "view/edit items" pages.
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Idea #3232
: [Documentation] Rearrange doc site so "run a sample pipeline in Workbench" comes before any vm/repo/terminal instructions.
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Idea #3234
: [Documentation] Update tutorials to match current code.
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Idea #3235
: [Workbench] Site-wide search from top nav
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Idea #3252
: [Documentation] Instructions for installing/using arv-put without root access
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Idea #3270
: [Workbench] Set up infrastructure for user experiments
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Idea #3349
: [Documentation] Update install docs
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