Bug #9362
Updated by Jiayong Li almost 8 years ago
I ran snap_freebayes_hu34D5B9. The pipeline https://workbench.f48sn.arvadosapi.com/pipeline_instances/f48sn-d1hrv-vi7dgz6phq60fm8 had a bad run (explained in #9361). So I reran the pipeline with --disable-reuse and had a successful run https://workbench.f48sn.arvadosapi.com/pipeline_instances/f48sn-d1hrv-of9pj0lw5h830m5
Now I'm running snap_gatk_hu34D5B9, naturally I turned on --enable-reuse to reuse the successful alignments in f48sn-d1hrv-of9pj0lw5h830m5, but it reused the bad alignments in f48sn-d1hrv-vi7dgz6phq60fm8 instead.
https://workbench.f48sn.arvadosapi.com/pipeline_instances/f48sn-d1hrv-soqcqpjh26gntc4
I think the arvados-cwl-runner should reuse the most recent run instead of an earlier one. Or maybe there should be a way to specify which run to reuse.
The command I'm using
<pre>
arvados-cwl-runner --debug --enable-reuse --local --wait --project-uuid f48sn-j7d0g-fnuojiyi5vnwigu main-snap_gatk_hu34D5B9.cwl main-snap_gatk_hu34D5B9-samples.json
</pre>