Bug #9659
Updated by Radhika Chippada almost 8 years ago
It appears that the cwl documentation may be out of sync with latest arvados-cwl-runner code updates.
<pre>
~/arvados/doc/user/cwl/bwa-mem$ arvados-cwl-runner bwa-mem.cwl bwa-mem-input.yml
/home/radhika/venv/bin/arvados-cwl-runner 1.0.20160717133709, arvados-python-client 0.1.20160627200331, cwltool 1.0.20160714182449
2016-07-21 19:43:30 arvados.arv-run[13106] INFO: Upload local files: "bwa-mem.cwl"
2016-07-21 19:43:30 arvados.arv-run[13106] INFO: Using collection 9tee4-4zz18-1om5a5o9jxspigw
2016-07-21 19:43:30 arvados.cwl-runner[13106] ERROR: Caught unhandled exception, marking pipeline as failed. Error was: 'UploadFile' object has no attribute 'keepref'
Workflow error, try again with --debug for more information:
Workflow failed.
</pre>