Arvados

Bug #14429

Updated by Jiayong Li over 5 years ago

I used the following simple cwl to do gzip using initial work dir. 

 _gzip.cwl_ 
 <pre> 
 cwlVersion: v1.0 
 class: CommandLineTool 
 requirements: 
   DockerRequirement: 
     dockerPull: arvados/jobs 
   InitialWorkDirRequirement: 
     listing: 
       - $(inputs.infile) 
 inputs: 
   infile: File 
 outputs: 
   outfile: 
     type: File 
     outputBinding: 
       glob: "*.gz" 
 baseCommand: gzip 
 arguments: 
   - $(inputs.infile.basename) 
 </pre> 

 Run: https://workbench.e51c5.arvadosapi.com/container_requests/e51c5-xvhdp-uzdzlsqwwodcz0e 

 Error message: 
 <pre> 
 gzip: foo: Device or resource busy 
 </pre>

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