Bug #14429
Updated by Jiayong Li almost 6 years ago
I used the following simple cwl to do gzip using initial work dir.
_gzip.cwl_
<pre>
cwlVersion: v1.0
class: CommandLineTool
requirements:
DockerRequirement:
dockerPull: arvados/jobs
InitialWorkDirRequirement:
listing:
- $(inputs.infile)
inputs:
infile: File
outputs:
outfile:
type: File
outputBinding:
glob: "*.gz"
baseCommand: gzip
arguments:
- $(inputs.infile.basename)
</pre>
Run: https://workbench.e51c5.arvadosapi.com/container_requests/e51c5-xvhdp-uzdzlsqwwodcz0e
Error message:
<pre>
gzip: foo: Device or resource busy
</pre>