Arvados Summit Fall 2013 Breakout 1 » History » Version 2
Tom Clegg, 10/27/2013 03:07 AM
1 | 1 | Jonathan Sheffi | h1. Arvados Summit Fall 2013 Breakout 1 |
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3 | h2. User stories (Jonathan & Ward facilitating) |
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5 | * As an admin, if I change my DB structure, I want Arvados to help me update the config |
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6 | * As an admin, I want to see the mapping of another dataset to my own |
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7 | * When I run a job, I want to be able to work as Draft or Final/Real results |
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8 | * As a consumer of genomic data, I want to visualize my data |
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9 | * As a commercial leader of a clinical lab, I want to be able to trace quote to cash for diagnostic tests |
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10 | * I want to be able to know where any file is. |
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11 | * As a patient or participant, I want to be able to export my data to another study. |
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12 | * As someone who works with data, I want the genotypic and phenotypic data I use to conform to a standard ontology. |
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13 | * As a clinician, I want to quantify the uncertainty of the data & analysis underlying my report, so that I and the patient understand the clinical decision more fully. |
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14 | * As a clinician, I want to run the same experiment on multiple data sets. |
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15 | * As a lab director and oncologist, I want exome raw reads to called variants to take 15 minutes. |
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16 | * As a data miner, I want to be able to query *all* public data without downloading it. |
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17 | * As a researcher, I want to be able to set up a standard pipeline for a particular type of data set. |
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18 | * As an informatician, I want all my data to conform to a standard format so that I can analyze across multiple data sets. |
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19 | * As a clinician, I want to collect & track inbound case data, such as referral letters, ICD-9 diagnosis codes, case summaries, consents, medical reports, and insurance pre-verifications. |
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20 | * As an informatician, I want to be able to track & manage ICD-9/10 data. |
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21 | * As a lab director or clinician, I want to share a report with another clinician at another institution. |
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22 | * As a clinician, if I discover a mutation, I want to share that with an analytical tool or aggregator of data (e.g. GeneInsight). |
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23 | * As a user, I want to associate ‘keepalive’ metadata to my intermediate data |
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24 | * As Arvados, I record profiling information that data expiration for intermediate data can be based on |
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25 | * As an informatician, I can easily manipulate VCF files in parallel (as easy as GNV parallel) |
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26 | * As a compliance officer, I have structured insight into the consents for my data |
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27 | * As a researcher, I want to be able to collaborate on big datasets without having to copy them. |
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28 | * As an informatician, I want to associate metadata with (a section of) my pipelines. |
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29 | * As a new user, I can browse pipelines for metadata, see how ‘popular’ datasets and pipelines are [‘social features’] |
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31 | 2 | Tom Clegg | h2. User stories (Tom facilitating) |
32 | 1 | Jonathan Sheffi | |
33 | 2 | Tom Clegg | * As a prospective user I can test the current level of functionality in Arvados. |
34 | * As a prospective user I can learn about Keep's functionality and what type of role it can support in my organization. |
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35 | * As a newcomer I can see a high-level functional description of the Arvados components and how they fit together. |
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36 | * As an admin I can migrate an existing storage system to Keep. |
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37 | * As an informatician (who has never used MapReduce) I can learn how to apply the MapReduce principle to my work. |
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38 | * As an informatician I can explore instructive examples of how to use MapReduce. |
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39 | * As an administrator I can implement a permission system suitable for my organization. |
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40 | * As an administrator I can enable audit tracking and view an audit trail for data/objects in the system (which users/jobs have read/written them). |
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41 | * As an administrator I can ensure that important users' jobs can not be unduly delayed by a less-important user who routinely submits lots of jobs. |
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42 | * As an administrator I can monitor the activity level of the system. |
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43 | * As an administrator I can monitor the status of the hardware and software components in the system. |
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44 | * As a user or administrator I can pause/checkpoint a job and resume it later. |
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45 | * As an administrator or developer I can start up a single-node Arvados system for testing and evaluation purposes. |
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46 | * As an informatician I can understand how to use a database as input to a job, and how reproducibility features work in this case. |