|
1
|
{
|
|
2
|
"auth_uuid": "1zj7s-gj3su-rgf6fnx5optadj6",
|
|
3
|
"command": [
|
|
4
|
"arvados-cwl-runner",
|
|
5
|
"--local",
|
|
6
|
"--api=containers",
|
|
7
|
"--no-log-timestamps",
|
|
8
|
"--debug",
|
|
9
|
"--disable-reuse",
|
|
10
|
"--on-error=continue",
|
|
11
|
"/var/lib/cwl/workflow.json#main",
|
|
12
|
"/var/lib/cwl/cwl.input.json"
|
|
13
|
],
|
|
14
|
"container_image": "23ba2134ae25b03ed7f643c7762d7b0c+419",
|
|
15
|
"created_at": "2017-07-28T14:04:32.950079000Z",
|
|
16
|
"cwd": "/var/spool/cwl",
|
|
17
|
"environment": {},
|
|
18
|
"etag": "3f0g5lnh6xfm6gpz99dra1awl",
|
|
19
|
"exit_code": null,
|
|
20
|
"finished_at": null,
|
|
21
|
"href": "/containers/1zj7s-dz642-bvvopmp5qs9rdjx",
|
|
22
|
"kind": "arvados#container",
|
|
23
|
"locked_by_uuid": "1zj7s-gj3su-cbfvk29rfdmgpge",
|
|
24
|
"log": null,
|
|
25
|
"modified_at": "2017-07-28T14:04:35.783924000Z",
|
|
26
|
"modified_by_client_uuid": "1zj7s-ozdt8-juvj385oy3thhc6",
|
|
27
|
"modified_by_user_uuid": "1zj7s-tpzed-000000000000000",
|
|
28
|
"mounts": {
|
|
29
|
"/var/lib/cwl/cwl.input.json": {
|
|
30
|
"content": {
|
|
31
|
"inp1": [
|
|
32
|
"one",
|
|
33
|
"two"
|
|
34
|
],
|
|
35
|
"inp2": [
|
|
36
|
"three",
|
|
37
|
"four"
|
|
38
|
]
|
|
39
|
},
|
|
40
|
"kind": "json"
|
|
41
|
},
|
|
42
|
"/var/lib/cwl/workflow.json": {
|
|
43
|
"content": {
|
|
44
|
"$graph": [
|
|
45
|
{
|
|
46
|
"arguments": [
|
|
47
|
"-n",
|
|
48
|
"foo"
|
|
49
|
],
|
|
50
|
"baseCommand": "echo",
|
|
51
|
"class": "CommandLineTool",
|
|
52
|
"id": "#echo",
|
|
53
|
"inputs": [
|
|
54
|
{
|
|
55
|
"id": "#echo/echo_in1",
|
|
56
|
"inputBinding": {},
|
|
57
|
"type": "string"
|
|
58
|
},
|
|
59
|
{
|
|
60
|
"id": "#echo/echo_in2",
|
|
61
|
"inputBinding": {},
|
|
62
|
"type": "string"
|
|
63
|
}
|
|
64
|
],
|
|
65
|
"outputs": [
|
|
66
|
{
|
|
67
|
"id": "#echo/echo_out",
|
|
68
|
"outputBinding": {
|
|
69
|
"glob": "step1_out",
|
|
70
|
"loadContents": true,
|
|
71
|
"outputEval": "$(self[0].contents)"
|
|
72
|
},
|
|
73
|
"type": "string"
|
|
74
|
}
|
|
75
|
],
|
|
76
|
"stdout": "step1_out"
|
|
77
|
},
|
|
78
|
{
|
|
79
|
"class": "Workflow",
|
|
80
|
"id": "#main",
|
|
81
|
"inputs": [
|
|
82
|
{
|
|
83
|
"id": "#main/inp1",
|
|
84
|
"type": {
|
|
85
|
"items": "string",
|
|
86
|
"type": "array"
|
|
87
|
}
|
|
88
|
},
|
|
89
|
{
|
|
90
|
"id": "#main/inp2",
|
|
91
|
"type": {
|
|
92
|
"items": "string",
|
|
93
|
"type": "array"
|
|
94
|
}
|
|
95
|
}
|
|
96
|
],
|
|
97
|
"outputs": [
|
|
98
|
{
|
|
99
|
"id": "#main/out",
|
|
100
|
"outputSource": "#main/step1/echo_out",
|
|
101
|
"type": {
|
|
102
|
"items": "string",
|
|
103
|
"type": "array"
|
|
104
|
}
|
|
105
|
}
|
|
106
|
],
|
|
107
|
"requirements": [
|
|
108
|
{
|
|
109
|
"class": "ScatterFeatureRequirement"
|
|
110
|
}
|
|
111
|
],
|
|
112
|
"steps": [
|
|
113
|
{
|
|
114
|
"id": "#main/step1",
|
|
115
|
"in": [
|
|
116
|
{
|
|
117
|
"id": "#main/step1/echo_in1",
|
|
118
|
"source": "#main/inp1"
|
|
119
|
},
|
|
120
|
{
|
|
121
|
"id": "#main/step1/echo_in2",
|
|
122
|
"source": "#main/inp2"
|
|
123
|
}
|
|
124
|
],
|
|
125
|
"out": [
|
|
126
|
"#main/step1/echo_out"
|
|
127
|
],
|
|
128
|
"run": "#echo",
|
|
129
|
"scatter": [
|
|
130
|
"#main/step1/echo_in1",
|
|
131
|
"#main/step1/echo_in2"
|
|
132
|
],
|
|
133
|
"scatterMethod": "dotproduct"
|
|
134
|
}
|
|
135
|
]
|
|
136
|
}
|
|
137
|
],
|
|
138
|
"cwlVersion": "v1.0"
|
|
139
|
},
|
|
140
|
"kind": "json"
|
|
141
|
},
|
|
142
|
"/var/spool/cwl": {
|
|
143
|
"kind": "collection",
|
|
144
|
"writable": true
|
|
145
|
},
|
|
146
|
"stdout": {
|
|
147
|
"kind": "file",
|
|
148
|
"path": "/var/spool/cwl/cwl.output.json"
|
|
149
|
}
|
|
150
|
},
|
|
151
|
"output": null,
|
|
152
|
"output_path": "/var/spool/cwl",
|
|
153
|
"owner_uuid": "1zj7s-tpzed-000000000000000",
|
|
154
|
"priority": 1,
|
|
155
|
"progress": null,
|
|
156
|
"runtime_constraints": {
|
|
157
|
"API": true,
|
|
158
|
"keep_cache_ram": 268435456,
|
|
159
|
"ram": 1073741824,
|
|
160
|
"vcpus": 1
|
|
161
|
},
|
|
162
|
"scheduling_parameters": {},
|
|
163
|
"started_at": null,
|
|
164
|
"state": "Locked",
|
|
165
|
"uuid": "1zj7s-dz642-bvvopmp5qs9rdjx"
|
|
166
|
}
|