Arvados

https://workbench.e51c5.arvadosapi.com/container_requests/e51c5-xvhdp-edcfrqhr25s6oy7

I think a docker keep mount failed to go to the right place for a lot of the jobs here.

For example: https://workbench.e51c5.arvadosapi.com/container_requests/e51c5-xvhdp-wbk2gmyo6v5xldp#Log

https://workbench.e51c5.arvadosapi.com/container_requests/e51c5-xvhdp-gdoi10jwjsu0dhn#Log

2017-11-30T22:50:26.750692200Z Possible causes: command "/keep/8b3add8da4fa43c6208e0454237544bc+63/merge-fastqs.py" is missing, the interpreter given in #! is missing, or script has Windows line endings.
2017-11-30T22:50:26.750716300Z Cancelled

(not missing, doesn't have Windows line endings.)

2017-11-30T22:50:26.647337500Z container_linux.go:247: starting container process caused "process_linux.go:359: container init caused \"rootfs_linux.go:54: mounting \\\"/tmp/keep453790790/by_id/cae94730089c132c2eb92f9162c74504+62619/myGenome\\\" to rootfs \\\"/tmp/docker/overlay2/7ceb80fb474b8833a5f938a5cbe387688a2d172bcd357d6143f082fba42c2aac/merged\\\" at \\\"/tmp/docker/overlay2/7ceb80fb474b8833a5f938a5cbe387688a2d172bcd357d6143f082fba42c2aac/merged/keep/cae94730089c132c2eb92f9162c74504+62619/myGenome\\\" caused \\\"no such file or directory\\\"\""