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Bug #3572

closed

[Crunch] 'arv pipeline run --submit --template ...' does not start pipeline instance

Added by Abram Connelly over 9 years ago. Updated over 9 years ago.

Status:
Resolved
Priority:
Normal
Assigned To:
Category:
Crunch
Target version:
Story points:
0.5

Description

When issuing the following command:

arv pipeline run --submit --template qr1hi-p5p6p-07tn56nsbtpsmmn HUMAN=01ebb0ee6072d5d1274e5f805c520d38+51822 REFPATH=fc31c655bcc3fc4538b7b29485bef016+715/tile_md5sum_hu154_sort.csv.gz NAME=huEC6EEC

I get the following pipeline instance ID:

qr1hi-d1hrv-547c3227ociw6iu

But the pipeline does not start running. When going to workbench, I see the pipeline instance there. Here is the message it gives:

This pipeline does not need any further inputs specified. You can start it by clicking the "Run" button whenever you're ready. (It's not too late to change existing settings, though.)

Click the "Components" tab above to see a full list of pipeline settings.

Without automatic pipeline execution, I need to 'manually' run this pipeline by saving the returned UUID of the pipeline instance and executing something like:

arv pipeline_instance update --uuid $PIPID --pipeline-instance '{"state":"RunningOnServer"}'

Where $PIPID is the pipeline instance id as returned by the submit request.

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