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Idea #4566
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[Documentation] Introduce compute workflow / pipeline concepts in user guide
Start date:
Due date:
Story points:
1.0
Release:
Release relationship:
Auto
Description
The first page about running your own compute jobs (beyond using an existing template in Workbench) dives right into the deep end with bwa-mem and some UUIDs. http://doc.arvados.org/user/topics/running-pipeline-command-line.html
Before this page we need to- introduce the relevant concepts of pipeline templates, pipeline instances, components, and jobs
- mention the basic features of pipeline templates
- how data gets passed from one job to another in a pipeline with
output_of - how
script_parametersin a pipeline template relates to workbench UI, jobs, and task processes
- how data gets passed from one job to another in a pipeline with
- offer a couple of different scenarios, with a summary of the appropriate way to build and invoke pipelines in each case (with links to the examples on the other tutorial pages).
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